Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_B03
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   4.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 741 PPPPXXXXKXXXXPPPPPXGG 679
           PPPP    +    PPPPP  G
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPG 31



 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 739 PPPPPXXXKXXXXPPPPXGGG 677
           PPPPP   +    PPPP   G
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 739 PPPPPXXXKXXXXPPPP 689
           PPPPP        PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 739 PPPPPXXXKXXXXPPPP 689
           PPPPP        PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 741 PPPPXXXXKXXXXPPPPP 688
           PPPP         PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 741 PPPPXXXXKXXXXPPPPP 688
           PPPP         PPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 741 PPPPXXXXKXXXXPPPPP 688
           PPPP         PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,136
Number of Sequences: 5004
Number of extensions: 19959
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)