Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_B02
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    55   2e-08
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    55   2e-08
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   2.8  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   8.5  

>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 25/32 (78%), Positives = 27/32 (84%)
 Frame = +2

Query: 305 GKVHGSLARAGKVKGQTPKVEKQQXXKKXTGR 400
           GKVHGSLARAGKVK QTPKVEKQ+  K+  GR
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGR 33


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 25/32 (78%), Positives = 27/32 (84%)
 Frame = +2

Query: 305 GKVHGSLARAGKVKGQTPKVEKQQXXKKXTGR 400
           GKVHGSLARAGKVK QTPKVEKQ+  K+  GR
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGR 33


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 300 SXGTVXYSSDDESSETRHXSSKXAPHNDRVRSSSPTAA 187
           S G +  S D +     H   K    ND++ SSS +A+
Sbjct: 687 SWGRLFVSGDSDKEHKEHKKDKQKKKNDQISSSSKSAS 724


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 516 YFCILFTYKSMNWSW 472
           YFC+++T  S N+SW
Sbjct: 748 YFCVVYTGGSSNFSW 762


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,422
Number of Sequences: 5004
Number of extensions: 31697
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)