Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_B02
         (909 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0507 + 3655570-3655573,3655648-3655832                           54   1e-07
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492...    29   5.1  

>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 25/32 (78%), Positives = 26/32 (81%)
 Frame = +2

Query: 305 GKVHGSLARAGKVKGQTPKVEKQQXXKKXTGR 400
           GKVHGSLARAGKV+GQTPKV KQ   KK  GR
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGR 33



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +3

Query: 408 RXIQYNRRFVNVVQTFGRRRGPNSN 482
           + +QYNRRFV  V  FG++RGPNS+
Sbjct: 36  KRMQYNRRFVTAVVGFGKKRGPNSS 60


>04_04_0165 +
           23247265-23247472,23248115-23248407,23249182-23249239,
           23249302-23250014
          Length = 423

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 145 PGVHWSXQGTHSXSXCSWR*RPYSIIMWS 231
           PG+HW+ Q     S CS    P  I MW+
Sbjct: 378 PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,348,773
Number of Sequences: 37544
Number of extensions: 221201
Number of successful extensions: 470
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)