Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_B02
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    57   2e-08

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 26/34 (76%), Positives = 28/34 (82%)
 Frame = +2

Query: 299 LGGKVHGSLARAGKVKGQTPKVEKQQXXKKXTGR 400
           LGGKVHGSLARAGKV+ QTPKV+KQ   KK  GR
Sbjct: 69  LGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGR 102



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = +3

Query: 408 RXIQYNRRFVNVVQTFGRRRGPNSNS 485
           R +QY RR+VNV    G++RGPNSNS
Sbjct: 105 RRVQYTRRYVNVASGPGKKRGPNSNS 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,756,229
Number of Sequences: 27780
Number of extensions: 186201
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)