Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_B01
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 29 0.90
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa... 29 1.2
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 27 2.7
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 3.6
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 27 3.6
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 27 4.8
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 26 6.3
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 26 8.4
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 26 8.4
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 29.1 bits (62), Expect = 0.90
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 376 AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL 504
AK G ++ VGG ++ E EK + ++++ A A ++ GVL
Sbjct: 402 AKLSGGIAVIKVGGSSEVEVNEKKDRIVDALNAVKAAVSEGVL 444
>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +1
Query: 736 VLXNVYSTI-YHDVPAIINLVDYV----KVGAYXYYTPTRNNK 849
++ + ST+ YHD+ IN+V V +G Y YY T+ NK
Sbjct: 316 IITIIASTLFYHDILLPINIVGLVITLCGIGVYNYYRITKGNK 358
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 479 LLSLIPECCWLNNMVSMELTSP 544
L +L+PE W NNM EL +P
Sbjct: 227 LQALLPEVAWKNNMNQWELLNP 248
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +1
Query: 220 LPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTV 399
+P+ D T L GY + D L L+ +L I R HD Y + + Y +
Sbjct: 1125 MPVPNDEFKKISTILARGYLALDEDESYLPLLSIHLLISRNHDPYLMLNLILKHYLSMIY 1184
Query: 400 L 402
L
Sbjct: 1185 L 1185
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 274 SRTASGCRTTERDRGPTAACGLEIL*HSSCCRSNKVLCC 158
S+ GC +TE+ T+ C E SCC S K CC
Sbjct: 257 SQEKKGCCSTEK----TSCCSQE---KKSCCTSEKPSCC 288
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 751 YSTIY-HDVPAIINLVDYVKVGAYXYYTPTRNN 846
YS+IY +DVPAI V Y V Y Y NN
Sbjct: 441 YSSIYSNDVPAIPPNVPYTFVDPYTYACYINNN 473
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 26.6 bits (56), Expect = 4.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -1
Query: 542 ARSIPSKPYC--SANSTPELMKAVRACCDSSRRLYFSGSSVSASPPTDNNTVRPG 384
A S PS P S +STP + ++ + + Y +SVS+ PP ++ V PG
Sbjct: 277 ATSAPSVPSALSSISSTPFMKPSIPSTIPTIPSAY--SASVSSQPPLTHSYVHPG 329
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 723 LHLRLVDKGLFQFTNKGSETFTVLRFLLIDWRGAECLLNSMP 598
+H+ + LFQ T K + + L F L + G EC+L P
Sbjct: 271 IHVSTLVTPLFQVTEKIGKNTSDLWFALCEIDGLECVLKYRP 312
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 8.4
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 334 DRTHDNYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSG 498
D+ D+ + TS + + +GG TEE + YN+ +E +A T +IN G
Sbjct: 320 DKFVDSLNSWTSELTHCKNIILTPHIGGS--TEEAQ-YNIGIEVSEALTRYINEG 371
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 515 CSANSTPELMKAVRACCDSSRRLYFSGS 432
C NST + M V C D RLY G+
Sbjct: 652 CEFNSTRKRMSIVFRCPDGKIRLYVKGA 679
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,518,782
Number of Sequences: 5004
Number of extensions: 69585
Number of successful extensions: 204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -