Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_A21
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.18 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    27   0.31 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    25   1.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -2

Query: 533 VERCHRLQN--HHLIHQQFQDEHNPVESLQ 450
           ++R H LQN  HHL     QD H P +  Q
Sbjct: 138 LQRHHHLQNHHHHLQSTAVQDHHRPYQQQQ 167


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 569 RFPELAVQTTRKQAWFETSPAREVQSKLSNRVWRRP*SYGLPYKNLNKNLH 721
           ++ E + + +R +   E S  R++ S LSN       +Y   Y N NK L+
Sbjct: 291 KYRETSKERSRDRTERERSKERKIISSLSNNYNYNNNNYKYNYNNYNKKLY 341


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 569 RFPELAVQTTRKQAWFETSPAREVQSKLSNRVWRRP*SYGLPYKNLNKNLHC 724
           ++ E   + +R +   E S   ++ S LSNR      +Y   Y N N N +C
Sbjct: 58  KYRETWKERSRDRTERERSREPKIISSLSNRTIHNNNNYKYNYNNNNYNNNC 109


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 569 RFPELAVQTTRKQAWFETSPAREVQSKLSNRVWRRP*SYGLPYKNLNKNLHC 724
           ++ E   + +R +   E S   ++ S LSN+      +Y   Y N N N +C
Sbjct: 58  KYRETWKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNC 109


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 569 RFPELAVQTTRKQAWFETSPAREVQSKLSNRVWRRP*SYGLPYKNLNKNLHC 724
           ++ E   + +R +   E S   ++ S LSN+      +Y   Y N N N +C
Sbjct: 58  KYRETWKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNC 109


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 569 RFPELAVQTTRKQAWFETSPAREVQSKLSNRVWRRP*SYGLPYKNLNKNLHC 724
           ++ E   + +R +   E S   ++ S LSN+      +Y   Y N N N +C
Sbjct: 58  KYRETWKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNC 109


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 356 VGLVCDDEEMLIVYRFRG 303
           VGL  +DEE L+   FRG
Sbjct: 20  VGLCSEDEERLVRDLFRG 37


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 569 RFPELAVQTTRKQAWFETSPAREVQSKLSNRVWRRP*SYGLPYKNLNKN 715
           ++ E + + +R +   E S   ++ S LSN+      +Y   Y N N N
Sbjct: 291 KYRETSKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYN 339


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 303 SSKPVHDEHLFIITHQAYELWFKQIIFEVDSVRAL-LNVEGL 425
           S+KPV DE++ +++++  ++      F+  + R L  NV+ L
Sbjct: 367 SNKPVKDEYMLVLSNRMQKIVNDDFNFDDVNFRILGANVKEL 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,556
Number of Sequences: 438
Number of extensions: 4094
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)