Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_A04
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   130   2e-31
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    31   0.17 
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    27   3.7  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   6.4  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    26   8.5  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    26   8.5  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   8.5  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  130 bits (315), Expect = 2e-31
 Identities = 71/150 (47%), Positives = 89/150 (59%), Gaps = 3/150 (2%)
 Frame = +3

Query: 150 RAIAVLSTET-IRGNITFTQV-QDGKVHVQGGITGLPPG-EYGFHVHEKGDLSGGCLSTG 320
           RA+AVL  ++ + G +TF QV Q+ +V V   + G     + GFH+H+ GD + GC S G
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 321 SHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHE 500
            HFNPE K HG      RHVGDLGN+  D     +    D  ISL G + IIGR +V+H 
Sbjct: 63  PHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHA 122

Query: 501 KADDYGKSDHPDSRKTGNAGGRVACGVIGI 590
             DD GK    +S KTGNAG R ACGVIGI
Sbjct: 123 GEDDLGKGTSEESLKTGNAGARNACGVIGI 152


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +3

Query: 360  NDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIG 479
            ND   H GDLG ++ D N        DDQI L G    IG
Sbjct: 3092 NDRIYHTGDLGRLLKDNNSLEFCGRTDDQIKLRGQRIEIG 3131


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 558 GGRVACGVIGIL*IYKFLI*LSYLIKY 638
           GG++ C +IG++ I  F+  +SYL  Y
Sbjct: 197 GGKLLCWIIGVIFIAAFIAHVSYLSFY 223


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 263 FTRRQPSDAPLNVNLPILN 207
           F ++QP+  PL  N+P+LN
Sbjct: 532 FEQQQPTTIPLQPNIPVLN 550


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 523 VTIRTPGRPATLAVESLAVSSEFYRSTNFSFN 618
           +T   PG+P TL V     S+E+    N +FN
Sbjct: 724 LTTFAPGKPLTLVVHPADGSAEWSTKLNHTFN 755


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 129 HGFTTPSRAIAVLST 173
           HGF+TP +AI+ +ST
Sbjct: 143 HGFSTPQKAISAVST 157


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 375 HVGDLGNVVFDENHYSRIDLVDDQI 449
           HV + GNV FD    S + L+D ++
Sbjct: 102 HVNEDGNVAFDSEFDSNLKLLDSEL 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,127
Number of Sequences: 5004
Number of extensions: 52298
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)