Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_A01
         (960 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.32 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.32 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   5.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 881 GHXPPXXPPXGXXGXXFPXPPPPGG 955
           G+ PP  PP G      P PPPP G
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 881 GHXPPXXPPXGXXGXXFPXPPPP 949
           G  PP  PP G  G   P PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 901 PPXGEXGGXLPXPPPPG 951
           PP    GG  P PPPPG
Sbjct: 753 PPAPIMGGPPPPPPPPG 769


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = -2

Query: 500 PPXPGGGGVXXXXEXXPP-XPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPP 351
           PP PG  G+       PP  PPG         G    F G    P  PG P
Sbjct: 506 PPIPGAPGMPNLNMSQPPMVPPG----MALPPGMPAPFPGYPAVPAMPGIP 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,550,721
Number of Sequences: 5004
Number of extensions: 18093
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)