Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_A01
(960 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC085004-1|AAH85004.1| 710|Homo sapiens KHSRP protein protein. 39 0.024
AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collag... 37 0.13
U94832-1|AAB53222.1| 711|Homo sapiens KSRP protein. 36 0.29
AF093747-1|AAD29861.1| 115|Homo sapiens KH type splicing regula... 36 0.29
X57527-1|CAA40748.1| 744|Homo sapiens alpha 1(VIII) collagen pr... 34 0.67
BT009917-1|AAP88919.1| 744|Homo sapiens collagen, type VIII, al... 34 0.67
BC063833-1|AAH63833.1| 1336|Homo sapiens collagen, type XVIII, a... 34 0.67
BC033715-1|AAH33715.1| 816|Homo sapiens Similar to collagen, ty... 34 0.67
BC013581-1|AAH13581.1| 744|Homo sapiens collagen, type VIII, al... 34 0.67
AY550974-1|AAT52220.1| 745|Homo sapiens cell proliferation-indu... 34 0.67
AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen mid... 34 0.67
AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen lon... 34 0.67
AY484971-1|AAR83298.1| 1336|Homo sapiens type XVIII collagen sho... 34 0.67
AF018082-1|AAC39659.1| 1336|Homo sapiens type XVIII collagen pro... 34 0.67
AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen pro... 34 0.67
Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for ... 33 2.0
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 33 2.0
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 33 2.0
X05561-1|CAA29075.1| 944|Homo sapiens protein ( Human mRNA for ... 33 2.0
M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen ... 33 2.0
BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein. 33 2.0
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 33 2.0
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 33 2.0
AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha ... 33 2.0
AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha ... 33 2.0
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 33 2.0
X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing f... 31 4.7
BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor proline... 31 4.7
BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein. 31 4.7
BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein. 31 4.7
AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor proline... 31 4.7
AF319523-1|AAK18178.1| 123|Homo sapiens RT-LI protein. 31 4.7
U04520-1|AAF66217.2| 1691|Homo sapiens type IV collagen alpha 5 ... 31 6.2
BX284695-2|CAI17373.1| 1461|Homo sapiens KIAA0460 protein. 31 6.2
BX284695-1|CAI17374.1| 1435|Homo sapiens KIAA0460 protein. 31 6.2
BC045623-1|AAH45623.2| 1398|Homo sapiens KIAA0460 protein protein. 31 6.2
AL611942-3|CAH70314.1| 1461|Homo sapiens KIAA0460 protein. 31 6.2
AL611942-2|CAH70313.1| 1435|Homo sapiens KIAA0460 protein. 31 6.2
AL356356-11|CAI15496.1| 1435|Homo sapiens KIAA0460 protein. 31 6.2
AL356356-10|CAI15497.1| 1461|Homo sapiens KIAA0460 protein. 31 6.2
AB007929-1|BAA32305.2| 1452|Homo sapiens KIAA0460 protein protein. 31 6.2
L22548-1|AAA51864.1| 684|Homo sapiens collagen type XVIII alpha... 31 8.2
BC073988-1|AAH73988.1| 682|Homo sapiens FMNL1 protein protein. 31 8.2
AY278319-1|AAP32476.1| 1100|Homo sapiens leukocyte formin protein. 31 8.2
AF432213-1|AAL99920.1| 991|Homo sapiens CLL-associated antigen ... 31 8.2
>BC085004-1|AAH85004.1| 710|Homo sapiens KHSRP protein protein.
Length = 710
Score = 39.1 bits (87), Expect = 0.024
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = -2
Query: 500 PPXPGGGGVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSP 360
PP GGGG PP PPG G + G G G G P P
Sbjct: 15 PPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPGGGGPGGGSAGGPSQP 61
>AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collagen
protein.
Length = 1519
Score = 36.7 bits (81), Expect = 0.13
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = -2
Query: 491 PGGGGVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPPXXPXXG 333
PGGGG PP PPG RG G P PGP P G
Sbjct: 1107 PGGGGFFGSSLPGPPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIG 1159
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = -2
Query: 500 PPXPGGG-GVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPPXXP 342
PP P G G+ PP PPG G G P PGPP P
Sbjct: 1149 PPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP-GPHRQTISVPGPPGPPGPPGPP 1201
>U94832-1|AAB53222.1| 711|Homo sapiens KSRP protein.
Length = 711
Score = 35.5 bits (78), Expect = 0.29
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = -2
Query: 500 PPXPGGGGVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSP 360
PP GGGG PP PPG G + G G G P P
Sbjct: 15 PPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPCGGGPGGGSAGGPSQP 61
>AF093747-1|AAD29861.1| 115|Homo sapiens KH type splicing
regulatory protein protein.
Length = 115
Score = 35.5 bits (78), Expect = 0.29
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = -2
Query: 500 PPXPGGGGVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSP 360
PP GGGG PP PPG G + G G G P P
Sbjct: 15 PPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPCGGGPGGGSAGGPSQP 61
>X57527-1|CAA40748.1| 744|Homo sapiens alpha 1(VIII) collagen
protein.
Length = 744
Score = 34.3 bits (75), Expect = 0.67
Identities = 26/86 (30%), Positives = 27/86 (31%)
Frame = +1
Query: 235 GXPPXGGG*GXPXXEXXPXXXGXPPXXXFXKKXPXXGKXGGPGLXGXPXXPXKXXXXPXX 414
G P GG G P G P P GK G GL G P P
Sbjct: 498 GIPGIGGPSGPIGPPGIPGPKGEPGLPG-PPGFPGIGKPGVAGLHGPPGKPGALGPQGQP 556
Query: 415 XPLFXPXPGGXGGXXSXXKXTPPPPG 492
P P G G + TPPP G
Sbjct: 557 GLPGPPGPPGPPGPPAVMPPTPPPQG 582
>BT009917-1|AAP88919.1| 744|Homo sapiens collagen, type VIII, alpha
1 protein.
Length = 744
Score = 34.3 bits (75), Expect = 0.67
Identities = 26/86 (30%), Positives = 27/86 (31%)
Frame = +1
Query: 235 GXPPXGGG*GXPXXEXXPXXXGXPPXXXFXKKXPXXGKXGGPGLXGXPXXPXKXXXXPXX 414
G P GG G P G P P GK G GL G P P
Sbjct: 498 GIPGIGGPSGPIGPPGIPGPKGEPGLPG-PPGFPGIGKPGVAGLHGPPGKPGALGPQGQP 556
Query: 415 XPLFXPXPGGXGGXXSXXKXTPPPPG 492
P P G G + TPPP G
Sbjct: 557 GLPGPPGPPGPPGPPAVMPPTPPPQG 582
>BC063833-1|AAH63833.1| 1336|Homo sapiens collagen, type XVIII, alpha
1 protein.
Length = 1336
Score = 34.3 bits (75), Expect = 0.67
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -2
Query: 491 PGGGGVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPP 351
PGGGG PP PPG G G G P GPP
Sbjct: 927 PGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPP 973
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = -2
Query: 500 PPXPGGG-GVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPPXXP 342
PP P G G+ PP PPG G G P PGPP P
Sbjct: 966 PPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP-GPHRQTISVPGPPGPPGPPGPP 1018
>BC033715-1|AAH33715.1| 816|Homo sapiens Similar to collagen, type
XVIII, alpha 1 protein.
Length = 816
Score = 34.3 bits (75), Expect = 0.67
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -2
Query: 491 PGGGGVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPP 351
PGGGG PP PPG G G G P GPP
Sbjct: 407 PGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPP 453
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = -2
Query: 500 PPXPGGG-GVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPPXXP 342
PP P G G+ PP PPG G G P PGPP P
Sbjct: 446 PPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP-GPHRQTISVPGPPGPPGPPGPP 498
>BC013581-1|AAH13581.1| 744|Homo sapiens collagen, type VIII, alpha
1 protein.
Length = 744
Score = 34.3 bits (75), Expect = 0.67
Identities = 26/86 (30%), Positives = 27/86 (31%)
Frame = +1
Query: 235 GXPPXGGG*GXPXXEXXPXXXGXPPXXXFXKKXPXXGKXGGPGLXGXPXXPXKXXXXPXX 414
G P GG G P G P P GK G GL G P P
Sbjct: 498 GIPGIGGPSGPIGPPGIPGPKGEPGLPG-PPGFPGIGKPGVAGLHGPPGKPGALGPQGQP 556
Query: 415 XPLFXPXPGGXGGXXSXXKXTPPPPG 492
P P G G + TPPP G
Sbjct: 557 GLPGPPGPPGPPGPPAVMPPTPPPQG 582
>AY550974-1|AAT52220.1| 745|Homo sapiens cell
proliferation-inducing protein 41 protein.
Length = 745
Score = 34.3 bits (75), Expect = 0.67
Identities = 26/86 (30%), Positives = 27/86 (31%)
Frame = +1
Query: 235 GXPPXGGG*GXPXXEXXPXXXGXPPXXXFXKKXPXXGKXGGPGLXGXPXXPXKXXXXPXX 414
G P GG G P G P P GK G GL G P P
Sbjct: 499 GIPGIGGPSGPIGPPGIPGPKGEPGLPG-PPGFPGIGKPGVAGLHGPPGKPGALGPQGQP 557
Query: 415 XPLFXPXPGGXGGXXSXXKXTPPPPG 492
P P G G + TPPP G
Sbjct: 558 GLPGPPGPPGPPGPPAVMPPTPPPQG 583
>AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen middle
variant protein.
Length = 1516
Score = 34.3 bits (75), Expect = 0.67
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -2
Query: 491 PGGGGVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPP 351
PGGGG PP PPG G G G P GPP
Sbjct: 1107 PGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPP 1153
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = -2
Query: 500 PPXPGGG-GVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPPXXP 342
PP P G G+ PP PPG G G P PGPP P
Sbjct: 1146 PPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP-GPHRQTISVPGPPGPPGPPGPP 1198
>AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen long
variant protein.
Length = 1751
Score = 34.3 bits (75), Expect = 0.67
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -2
Query: 491 PGGGGVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPP 351
PGGGG PP PPG G G G P GPP
Sbjct: 1342 PGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPP 1388
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = -2
Query: 500 PPXPGGG-GVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPPXXP 342
PP P G G+ PP PPG G G P PGPP P
Sbjct: 1381 PPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP-GPHRQTISVPGPPGPPGPPGPP 1433
>AY484971-1|AAR83298.1| 1336|Homo sapiens type XVIII collagen short
variant protein.
Length = 1336
Score = 34.3 bits (75), Expect = 0.67
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -2
Query: 491 PGGGGVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPP 351
PGGGG PP PPG G G G P GPP
Sbjct: 927 PGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPP 973
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = -2
Query: 500 PPXPGGG-GVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPPXXP 342
PP P G G+ PP PPG G G P PGPP P
Sbjct: 966 PPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP-GPHRQTISVPGPPGPPGPPGPP 1018
>AF018082-1|AAC39659.1| 1336|Homo sapiens type XVIII collagen protein.
Length = 1336
Score = 34.3 bits (75), Expect = 0.67
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -2
Query: 491 PGGGGVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPP 351
PGGGG PP PPG G G G P GPP
Sbjct: 927 PGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPP 973
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = -2
Query: 500 PPXPGGG-GVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPPXXP 342
PP P G G+ PP PPG G G P PGPP P
Sbjct: 966 PPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP-GPHRQTISVPGPPGPPGPPGPP 1018
>AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen protein.
Length = 1516
Score = 34.3 bits (75), Expect = 0.67
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -2
Query: 491 PGGGGVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPP 351
PGGGG PP PPG G G G P GPP
Sbjct: 1107 PGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPP 1153
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = -2
Query: 500 PPXPGGG-GVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPPXXP 342
PP P G G+ PP PPG G G P PGPP P
Sbjct: 1146 PPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP-GPHRQTISVPGPPGPPGPPGPP 1198
>Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for
alpha1 chain of basement membrane (type IV) collagen.in
neoplastic tissue). ).
Length = 1212
Score = 32.7 bits (71), Expect = 2.0
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -2
Query: 491 PGGGGVXXXX-EXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPPXXP 342
PGG G + PP PPG G F G G P PGP P
Sbjct: 543 PGGVGFPGSRGDTGPPGPPGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEP 593
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 32.7 bits (71), Expect = 2.0
Identities = 26/93 (27%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Frame = +1
Query: 235 GXPPXGGG*GXPXXEXXPXXXGXPPXXXFXKKXPXXGKXGGPGLXGXP-----XXPXKXX 399
G PP G G P P PP F + P G G P P P
Sbjct: 295 GPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP--GPLGPPLTLAPPPHLPGPPPGAPP 352
Query: 400 XXPXXXPLFXPXPGGXGGXXSXXKXTPPPPGXG 498
P P F P P G S + PP G
Sbjct: 353 PAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYG 385
Score = 31.9 bits (69), Expect = 3.6
Identities = 17/56 (30%), Positives = 19/56 (33%)
Frame = +1
Query: 319 FXKKXPXXGKXGGPGLXGXPXXPXKXXXXPXXXPLFXPXPGGXGGXXSXXKXTPPP 486
F P + GP G P P P PL P P G G + PPP
Sbjct: 207 FPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPP 262
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 32.7 bits (71), Expect = 2.0
Identities = 26/93 (27%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Frame = +1
Query: 235 GXPPXGGG*GXPXXEXXPXXXGXPPXXXFXKKXPXXGKXGGPGLXGXP-----XXPXKXX 399
G PP G G P P PP F + P G G P P P
Sbjct: 295 GPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP--GPLGPPLTLAPPPHLPGPPPGAPP 352
Query: 400 XXPXXXPLFXPXPGGXGGXXSXXKXTPPPPGXG 498
P P F P P G S + PP G
Sbjct: 353 PAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYG 385
Score = 31.9 bits (69), Expect = 3.6
Identities = 17/56 (30%), Positives = 19/56 (33%)
Frame = +1
Query: 319 FXKKXPXXGKXGGPGLXGXPXXPXKXXXXPXXXPLFXPXPGGXGGXXSXXKXTPPP 486
F P + GP G P P P PL P P G G + PPP
Sbjct: 207 FPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPP 262
>X05561-1|CAA29075.1| 944|Homo sapiens protein ( Human mRNA for
alpha-1 chain of collagen IV N-terminus. ).
Length = 944
Score = 32.7 bits (71), Expect = 2.0
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -2
Query: 491 PGGGGVXXXX-EXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPPXXP 342
PGG G + PP PPG G F G G P PGP P
Sbjct: 588 PGGVGFPGSRGDTGPPGPPGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEP 638
>M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen
protein.
Length = 1669
Score = 32.7 bits (71), Expect = 2.0
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -2
Query: 491 PGGGGVXXXX-EXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPPXXP 342
PGG G + PP PPG G F G G P PGP P
Sbjct: 588 PGGVGFPGSRGDTGPPGPPGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEP 638
>BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein.
Length = 1669
Score = 32.7 bits (71), Expect = 2.0
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -2
Query: 491 PGGGGVXXXX-EXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPPXXP 342
PGG G + PP PPG G F G G P PGP P
Sbjct: 588 PGGVGFPGSRGDTGPPGPPGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEP 638
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 32.7 bits (71), Expect = 2.0
Identities = 26/93 (27%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Frame = +1
Query: 235 GXPPXGGG*GXPXXEXXPXXXGXPPXXXFXKKXPXXGKXGGPGLXGXP-----XXPXKXX 399
G PP G G P P PP F + P G G P P P
Sbjct: 222 GPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP--GPLGPPLTLAPPPHLPGPPPGAPP 279
Query: 400 XXPXXXPLFXPXPGGXGGXXSXXKXTPPPPGXG 498
P P F P P G S + PP G
Sbjct: 280 PAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYG 312
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 32.7 bits (71), Expect = 2.0
Identities = 26/93 (27%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Frame = +1
Query: 235 GXPPXGGG*GXPXXEXXPXXXGXPPXXXFXKKXPXXGKXGGPGLXGXP-----XXPXKXX 399
G PP G G P P PP F + P G G P P P
Sbjct: 332 GPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP--GPLGPPLTLAPPPHLPGPPPGAPP 389
Query: 400 XXPXXXPLFXPXPGGXGGXXSXXKXTPPPPGXG 498
P P F P P G S + PP G
Sbjct: 390 PAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYG 422
>AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha 1
protein.
Length = 1669
Score = 32.7 bits (71), Expect = 2.0
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -2
Query: 491 PGGGGVXXXX-EXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPPXXP 342
PGG G + PP PPG G F G G P PGP P
Sbjct: 588 PGGVGFPGSRGDTGPPGPPGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEP 638
>AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha 1
protein.
Length = 1669
Score = 32.7 bits (71), Expect = 2.0
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -2
Query: 491 PGGGGVXXXX-EXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPPXXP 342
PGG G + PP PPG G F G G P PGP P
Sbjct: 588 PGGVGFPGSRGDTGPPGPPGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEP 638
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 32.7 bits (71), Expect = 2.0
Identities = 26/93 (27%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Frame = +1
Query: 235 GXPPXGGG*GXPXXEXXPXXXGXPPXXXFXKKXPXXGKXGGPGLXGXP-----XXPXKXX 399
G PP G G P P PP F + P G G P P P
Sbjct: 295 GPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP--GPLGPPLTLAPPPHLPGPPPGAPP 352
Query: 400 XXPXXXPLFXPXPGGXGGXXSXXKXTPPPPGXG 498
P P F P P G S + PP G
Sbjct: 353 PAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYG 385
Score = 31.9 bits (69), Expect = 3.6
Identities = 17/56 (30%), Positives = 19/56 (33%)
Frame = +1
Query: 319 FXKKXPXXGKXGGPGLXGXPXXPXKXXXXPXXXPLFXPXPGGXGGXXSXXKXTPPP 486
F P + GP G P P P PL P P G G + PPP
Sbjct: 207 FPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPP 262
>X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing
factor protein.
Length = 707
Score = 31.5 bits (68), Expect = 4.7
Identities = 28/91 (30%), Positives = 28/91 (30%)
Frame = +1
Query: 226 PXVGXPPXGGG*GXPXXEXXPXXXGXPPXXXFXKKXPXXGKXGGPGLXGXPXXPXKXXXX 405
P G PP G G G P P PP P G P G P P
Sbjct: 137 PTSGAPP-GSGPG-PTPTPPPAVTSAPPGAP-PPTPPSSGVPTTPPQAGGPPPPPAAVPG 193
Query: 406 PXXXPLFXPXPGGXGGXXSXXKXTPPPPGXG 498
P P P PGG G P PG G
Sbjct: 194 PGPGPKQGPGPGGPKGGKMPG---GPKPGGG 221
>BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 31.5 bits (68), Expect = 4.7
Identities = 28/91 (30%), Positives = 28/91 (30%)
Frame = +1
Query: 226 PXVGXPPXGGG*GXPXXEXXPXXXGXPPXXXFXKKXPXXGKXGGPGLXGXPXXPXKXXXX 405
P G PP G G G P P PP P G P G P P
Sbjct: 137 PTSGAPP-GSGPG-PTPTPPPAVTSAPPGAP-PPTPPSSGVPTTPPQAGGPPPPPAAVPG 193
Query: 406 PXXXPLFXPXPGGXGGXXSXXKXTPPPPGXG 498
P P P PGG G P PG G
Sbjct: 194 PGPGPKQGPGPGGPKGGKMPG---GPKPGGG 221
>BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein.
Length = 525
Score = 31.5 bits (68), Expect = 4.7
Identities = 28/91 (30%), Positives = 28/91 (30%)
Frame = +1
Query: 226 PXVGXPPXGGG*GXPXXEXXPXXXGXPPXXXFXKKXPXXGKXGGPGLXGXPXXPXKXXXX 405
P G PP G G G P P PP P G P G P P
Sbjct: 137 PTSGAPP-GSGPG-PTPTPPPAVTSAPPGAP-PPTPPSSGVPTTPPQAGGPPPPPAAVPG 193
Query: 406 PXXXPLFXPXPGGXGGXXSXXKXTPPPPGXG 498
P P P PGG G P PG G
Sbjct: 194 PGPGPKQGPGPGGPKGGKMPG---GPKPGGG 221
>BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein.
Length = 634
Score = 31.5 bits (68), Expect = 4.7
Identities = 28/91 (30%), Positives = 28/91 (30%)
Frame = +1
Query: 226 PXVGXPPXGGG*GXPXXEXXPXXXGXPPXXXFXKKXPXXGKXGGPGLXGXPXXPXKXXXX 405
P G PP G G G P P PP P G P G P P
Sbjct: 64 PTSGAPP-GSGPG-PTPTPPPAVTSAPPGAP-PPTPPSSGVPTTPPQAGGPPPPPAAVPG 120
Query: 406 PXXXPLFXPXPGGXGGXXSXXKXTPPPPGXG 498
P P P PGG G P PG G
Sbjct: 121 PGPGPKQGPGPGGPKGGKMPG---GPKPGGG 148
>AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 31.5 bits (68), Expect = 4.7
Identities = 28/91 (30%), Positives = 28/91 (30%)
Frame = +1
Query: 226 PXVGXPPXGGG*GXPXXEXXPXXXGXPPXXXFXKKXPXXGKXGGPGLXGXPXXPXKXXXX 405
P G PP G G G P P PP P G P G P P
Sbjct: 137 PTSGAPP-GSGPG-PTPTPPPAVTSAPPGAP-PPTPPSSGVPTTPPQAGGPPPPPAAVPG 193
Query: 406 PXXXPLFXPXPGGXGGXXSXXKXTPPPPGXG 498
P P P PGG G P PG G
Sbjct: 194 PGPGPKQGPGPGGPKGGKMPG---GPKPGGG 221
>AF319523-1|AAK18178.1| 123|Homo sapiens RT-LI protein.
Length = 123
Score = 31.5 bits (68), Expect = 4.7
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +3
Query: 405 PPXXPPFX-SXARGXGGXXFPPXXNPPPPGXXGXXF 509
PP PP ARG PP PPPPG G F
Sbjct: 56 PPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGEAF 91
>U04520-1|AAF66217.2| 1691|Homo sapiens type IV collagen alpha 5 chain
protein.
Length = 1691
Score = 31.1 bits (67), Expect = 6.2
Identities = 26/89 (29%), Positives = 26/89 (29%)
Frame = +1
Query: 235 GXPPXGGG*GXPXXEXXPXXXGXPPXXXFXKKXPXXGKXGGPGLXGXPXXPXKXXXXPXX 414
G P G G P P G PP G G PG G P P
Sbjct: 1214 GNPGLPGPKGEPGFHGFPGVQG-PPGPPGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLP 1272
Query: 415 XPLFXPXPGGXGGXXSXXKXTPPPPGXGG 501
P P G GG K P PG G
Sbjct: 1273 GPEGPPGLPGNGG-IKGEKGNPGQPGLPG 1300
>BX284695-2|CAI17373.1| 1461|Homo sapiens KIAA0460 protein.
Length = 1461
Score = 31.1 bits (67), Expect = 6.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 884 HXPPXXPPXGXXGXXFPXPPPPGGP 958
H P PP G FP PPPP P
Sbjct: 1252 HAAPPPPPGEHSGIPFPTPPPPPPP 1276
>BX284695-1|CAI17374.1| 1435|Homo sapiens KIAA0460 protein.
Length = 1435
Score = 31.1 bits (67), Expect = 6.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 884 HXPPXXPPXGXXGXXFPXPPPPGGP 958
H P PP G FP PPPP P
Sbjct: 1226 HAAPPPPPGEHSGIPFPTPPPPPPP 1250
>BC045623-1|AAH45623.2| 1398|Homo sapiens KIAA0460 protein protein.
Length = 1398
Score = 31.1 bits (67), Expect = 6.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 884 HXPPXXPPXGXXGXXFPXPPPPGGP 958
H P PP G FP PPPP P
Sbjct: 1189 HAAPPPPPGEHSGIPFPTPPPPPPP 1213
>AL611942-3|CAH70314.1| 1461|Homo sapiens KIAA0460 protein.
Length = 1461
Score = 31.1 bits (67), Expect = 6.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 884 HXPPXXPPXGXXGXXFPXPPPPGGP 958
H P PP G FP PPPP P
Sbjct: 1252 HAAPPPPPGEHSGIPFPTPPPPPPP 1276
>AL611942-2|CAH70313.1| 1435|Homo sapiens KIAA0460 protein.
Length = 1435
Score = 31.1 bits (67), Expect = 6.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 884 HXPPXXPPXGXXGXXFPXPPPPGGP 958
H P PP G FP PPPP P
Sbjct: 1226 HAAPPPPPGEHSGIPFPTPPPPPPP 1250
>AL356356-11|CAI15496.1| 1435|Homo sapiens KIAA0460 protein.
Length = 1435
Score = 31.1 bits (67), Expect = 6.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 884 HXPPXXPPXGXXGXXFPXPPPPGGP 958
H P PP G FP PPPP P
Sbjct: 1226 HAAPPPPPGEHSGIPFPTPPPPPPP 1250
>AL356356-10|CAI15497.1| 1461|Homo sapiens KIAA0460 protein.
Length = 1461
Score = 31.1 bits (67), Expect = 6.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 884 HXPPXXPPXGXXGXXFPXPPPPGGP 958
H P PP G FP PPPP P
Sbjct: 1252 HAAPPPPPGEHSGIPFPTPPPPPPP 1276
>AB007929-1|BAA32305.2| 1452|Homo sapiens KIAA0460 protein protein.
Length = 1452
Score = 31.1 bits (67), Expect = 6.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 884 HXPPXXPPXGXXGXXFPXPPPPGGP 958
H P PP G FP PPPP P
Sbjct: 1243 HAAPPPPPGEHSGIPFPTPPPPPPP 1267
>L22548-1|AAA51864.1| 684|Homo sapiens collagen type XVIII alpha 1
protein.
Length = 684
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = -2
Query: 500 PPXPGGG-GVXXXXEXXPPXPPGXGXKRGXXXGXXXXFXGXXGXPXSPGPPXXP 342
PP P G G+ PP PPG G G P PGPP P
Sbjct: 313 PPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP-GPHRQTISVPGPPGPPGPPGPP 365
>BC073988-1|AAH73988.1| 682|Homo sapiens FMNL1 protein protein.
Length = 682
Score = 30.7 bits (66), Expect = 8.2
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 890 PPXXPPXGXXGXXFPXPPPPGGP 958
PP PP G G P PPPP P
Sbjct: 171 PPPPPPPGTDGPVPPPPPPPPPP 193
>AY278319-1|AAP32476.1| 1100|Homo sapiens leukocyte formin protein.
Length = 1100
Score = 30.7 bits (66), Expect = 8.2
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 890 PPXXPPXGXXGXXFPXPPPPGGP 958
PP PP G G P PPPP P
Sbjct: 589 PPPPPPPGTDGPVPPPPPPPPPP 611
>AF432213-1|AAL99920.1| 991|Homo sapiens CLL-associated antigen
KW-13 protein.
Length = 991
Score = 30.7 bits (66), Expect = 8.2
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 890 PPXXPPXGXXGXXFPXPPPPGGP 958
PP PP G G P PPPP P
Sbjct: 480 PPPPPPPGTDGPVPPPPPPPPPP 502
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,636,578
Number of Sequences: 237096
Number of extensions: 2267547
Number of successful extensions: 14380
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 3863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12292
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12714176638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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