Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_P24
         (985 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   0.079
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   0.28 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   1.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.3  
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    27   5.4  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   7.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   7.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect(2) = 0.079
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 611 PXPPPPPPPXXXXXG 655
           P PPPPPPP     G
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 24.6 bits (51), Expect(2) = 0.079
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 602 PXXPXPPPPPPP 637
           P    PPPPPPP
Sbjct: 756 PIMGGPPPPPPP 767



 Score = 24.2 bits (50), Expect(2) = 0.81
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 617 PPPPPPPXXXXXG 655
           PPPPPPP     G
Sbjct: 762 PPPPPPPGVAGAG 774



 Score = 23.8 bits (49), Expect(2) = 4.9
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +2

Query: 725 AXXPVXPPAALXXPXXXPXLXXXXXRXXXXPXXPPPP 835
           A  PV PPA +      P            P  PPPP
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 23.4 bits (48), Expect(2) = 0.81
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 611 PXPPPPPP 634
           P PPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 21.0 bits (42), Expect(2) = 4.9
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 620 PPPPPP 637
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect(2) = 0.28
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 602 PXXPXPPPPPP 634
           P  P PPPPPP
Sbjct: 6   PGNPPPPPPPP 16



 Score = 23.8 bits (49), Expect(2) = 0.28
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 617 PPPPPPP 637
           PPPPPPP
Sbjct: 24  PPPPPPP 30


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 602 PXXPXPPPPPPPXXXXXG 655
           P  P PPPPPPP     G
Sbjct: 942 PAFPPPPPPPPPLVSAAG 959


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/50 (28%), Positives = 18/50 (36%)
 Frame = +3

Query: 612 RXPXPPPXPPXRXQGLPXSXXXAXCLPSPRPXGPAXXXPSXPSXXPPHSR 761
           + P PPP P  R +G P     +     P P  P     +     PP  R
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGR 358



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 17/66 (25%), Positives = 18/66 (27%)
 Frame = +1

Query: 544 PPXPPPPXXXXXXXXXXXXXXXXXXPXPPPXXPXVXRXCRAAXRXPXASPPPXPXXRPAS 723
           PP PPPP                    PPP  P               S PP P  R A 
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370

Query: 724 XXXXRP 741
               +P
Sbjct: 371 STGRQP 376



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
 Frame = +1

Query: 544 PPXPP--PPXXXXXXXXXXXXXXXXXXPXPP--PXXPXVXRXCRAAXRXPXASPPPXPXX 711
           P  PP  PP                  P PP  P  P +     AA   P A+P P P  
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480

Query: 712 RPA 720
            PA
Sbjct: 481 APA 483


>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 168 RVDSYNRKHSDQCKSDRKFHDFYS*NRKLIITS 70
           RV  ++    D    DRKFHD    NRKL +TS
Sbjct: 259 RVKKHDYGGEDWSLLDRKFHDDDFSNRKLDLTS 291


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 611 PXPPPPPPP 637
           P PPPPPPP
Sbjct: 306 PPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 611 PXPPPPPPP 637
           P PPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 611 PXPPPPPPP 637
           P PPPPPPP
Sbjct: 236 PAPPPPPPP 244


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 27/118 (22%), Positives = 30/118 (25%), Gaps = 2/118 (1%)
 Frame = +1

Query: 619  PXPPPXXPXVXRXCRAAXRXPXASPPPXPXXRPASXXXXRPAXRRTXVXXXXSXAXRXVS 798
            P  PP  P            P   PP  P  +P S     P  R   V    S A     
Sbjct: 967  PSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPL 1026

Query: 799  PXXXXAXXXPXPLXGS--PRRXXLXPARLXXXXXPAXXPPXXXAXXXXPTXAXPRXXP 966
            P    A   P P      P      P        P+  PP        P+   P   P
Sbjct: 1027 P-SADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAP 1083


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,425
Number of Sequences: 5004
Number of extensions: 26193
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)