Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_P24
         (985 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.79 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.6  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   7.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.79
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 602 PXXPXPPPPPP 634
           P  P PPPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 611 PXPPPPPPP 637
           P P PPPPP
Sbjct: 339 PKPAPPPPP 347


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 617  PPPPPPP 637
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 617  PPPPPPP 637
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 611  PXPPPPPP 634
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 611  PXPPPPPP 634
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 10/29 (34%), Positives = 10/29 (34%)
 Frame = +3

Query: 402 PGXXPXXXXRSPRPXRXXRPXRXXAPPPG 488
           PG  P        P R   P     PPPG
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPG 49


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 250 PHDLHPQLSLDQPRGRLRHRDCPXPF 173
           P  + P +S+ +   R RH   P PF
Sbjct: 357 PRPMGPWISIQEQIPRFRHIGPPTPF 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,522
Number of Sequences: 438
Number of extensions: 4019
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32532591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)