Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_P22
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    28   1.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.8  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    27   5.0  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    26   8.8  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = -3

Query: 935 GXGGGXXXXXGGGXGGXXXXXGXGXGXXXXXRXGSWG 825
           G GGG     GGG GG     G G G     R GS G
Sbjct: 27  GFGGGRGGARGGGRGGARGGRG-GRGGARGGRGGSSG 62


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 878 PXPXXPXPPXXPXXXPPPXPP 940
           P P  P P   P   PPP PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 22/91 (24%), Positives = 22/91 (24%), Gaps = 2/91 (2%)
 Frame = +1

Query: 670  PPXXPPXPTXXPPLPSTPXAXKXXRSVX--IPLPXGXXXXXXXXXXXXXXXXXXPQLPXL 843
            P   PP P      PS P       S    IP P G                     P  
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP 1105

Query: 844  XXXXXPXPXPXXXXXPPXPPPXXXXXPPPXP 936
                   P P     PP P P     P P P
Sbjct: 1106 KPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 21/89 (23%), Positives = 26/89 (29%), Gaps = 5/89 (5%)
 Frame = +1

Query: 685  PXPTXXPPLP----STPXAXKXXRSVX-IPLPXGXXXXXXXXXXXXXXXXXXPQLPXLXX 849
            P P+  PP+P    + P   K   +V  +P P G                     P    
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145

Query: 850  XXXPXPXPXXXXXPPXPPPXXXXXPPPXP 936
                 P P     PP P P     P P P
Sbjct: 1146 SVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 28/133 (21%), Positives = 35/133 (26%), Gaps = 7/133 (5%)
 Frame = +1

Query: 559  GXXRVPVPXXXXSVYXPXX--PPLVLPXXYHXXYXXXLXPPXXPPXPTXXPPLP----ST 720
            G   VP P     V  P    PP+  P             P  P      PP+P    + 
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140

Query: 721  PXAXKXXRSVXIPLPXGXXXXXXXXXXXXXXXXXXPQLPXLXXXXXPXPX-PXXXXXPPX 897
            P       +  +P P G                    +P +       P  P     PP 
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPV 1200

Query: 898  PPPXXXXXPPPXP 936
            P P     P P P
Sbjct: 1201 PKPSVGVPPVPPP 1213


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
 Frame = +1

Query: 859 PXPXPXXXXXPPXPPP--XXXXXPPPXP 936
           P P P     PP PPP       PPP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 25  YREFLKILTFLSRAAKPVTIQNVFQGVVIRCTPCMRERSSFYASWLRREVS 177
           +R   K L F     + +    V     I  T  + + S  YASW+R+E S
Sbjct: 148 FRALSKPLGFSPYELREIVANQVLSNPDIYSTAILGKPSIEYASWIRKETS 198


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = +1

Query: 151 ASWLRREVSDHQPIFKVSLTPSRYSRLCHLGXXXXXXXXLRDFGRERPRTF 303
           A W+RR V D +    VS  P    R+  L         L +  R+R   F
Sbjct: 152 AEWIRRNVDDWEEAVVVSKNPGGAKRVTSLADTLNLDFALINTDRQRSSHF 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,268
Number of Sequences: 5004
Number of extensions: 39089
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)