Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_P22
(940 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 38 0.010
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 35 0.073
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 0.20
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 33 0.29
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.51
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.51
AF068713-9|AAC17800.1| 284|Caenorhabditis elegans Serpentine re... 32 0.51
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 27 0.56
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.2
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 31 1.2
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 31 1.2
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 31 1.2
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 30 2.1
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 30 2.1
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 30 2.1
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 30 2.1
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 30 2.1
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 30 2.1
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 30 2.1
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 30 2.1
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 30 2.7
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 3.6
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 3.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.8
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 29 4.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.8
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.3
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.3
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 28 8.4
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 37.9 bits (84), Expect = 0.010
Identities = 30/119 (25%), Positives = 33/119 (27%)
Frame = +1
Query: 574 PVPXXXXSVYXPXXPPLVLPXXYHXXYXXXLXPPXXPPXPTXXPPLPSTPXAXKXXRSVX 753
P P S P P Y PP P P P P+ P A +V
Sbjct: 35 PAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAP-YPQHAVPAPAPPLASYPQNAVP 93
Query: 754 IPLPXGXXXXXXXXXXXXXXXXXXPQLPXLXXXXXPXPXPXXXXXPPXPPPXXXXXPPP 930
+P P PQ P P P PP PPP PPP
Sbjct: 94 VPAPPPAPYPQHAVPAPAPPPAPYPQ------HAVPAPAPYQQQPPPPPPPPHYPPPPP 146
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/63 (28%), Positives = 20/63 (31%)
Frame = +1
Query: 571 VPVPXXXXSVYXPXXPPLVLPXXYHXXYXXXLXPPXXPPXPTXXPPLPSTPXAXKXXRSV 750
VP P + Y P P Y PP PP P PP P P + S
Sbjct: 107 VPAPAPPPAPYPQHAVPA--PAPYQQQPPPPPPPPHYPPPPPHYPPPPPAPHSAYIDHSA 164
Query: 751 XIP 759
P
Sbjct: 165 PRP 167
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 35.1 bits (77), Expect = 0.073
Identities = 23/80 (28%), Positives = 25/80 (31%)
Frame = -1
Query: 940 GXGGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVGXXXXLXRGGRXGGG*RGXXRXA 761
G GG G G G G G GR G RGG G G G +
Sbjct: 33 GSSGGWGGSDASAGASAGGTGGGRGGGRGGSGGGRGGGSGGG--RGGSGGAGAGGSGSGS 90
Query: 760 GGWXXXXWXXXRXGWTXXEG 701
GGW GW +G
Sbjct: 91 GGWGGQDGGSSAGGWGGSQG 110
Score = 32.3 bits (70), Expect = 0.51
Identities = 21/78 (26%), Positives = 24/78 (30%)
Frame = -1
Query: 934 GGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVGXXXXLXRGGRXGGG*RGXXRXAGG 755
G GG GG G G G +GG+ GGG RG GG
Sbjct: 111 GSQGGSSGGWGGSSRSDSGSGQGGWGGQQGGNSNAGGWGG-SQGGQNGGGGRGGSGGQGG 169
Query: 754 WXXXXWXXXRXGWTXXEG 701
W + GW G
Sbjct: 170 WGGSQDGGSQGGWGGQNG 187
Score = 30.7 bits (66), Expect = 1.6
Identities = 25/91 (27%), Positives = 25/91 (27%)
Frame = -3
Query: 935 GXGGGXXXXXGGGXGGXXXXXGXGXGXXXXXRXGSWGXXXXXXXXXXXXXXXXXXPXGRG 756
G GG GGG GG G G G G WG G
Sbjct: 177 GSQGGWGGQNGGGQGGNQGG-GGGRGGNQGGEQGGWGGQGGSQGGSQGGSQGGWGNQGGQ 235
Query: 755 MXTXRMXXXAXGVDGXGGXXVGXGGXXGGXR 663
R G G GG G GG G R
Sbjct: 236 QGGGRGGQQGPGGWGGGGRGGGWGGWGRGSR 266
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/75 (29%), Positives = 23/75 (30%)
Frame = -1
Query: 940 GXGGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVGXXXXLXRGGRXGGG*RGXXRXA 761
G GG GG G G G G G RGG+ G G G
Sbjct: 196 GGGGRGGNQGGEQGGWGGQGGSQGGSQGGSQGGWGNQGGQQGGGRGGQQGPGGWGGGGRG 255
Query: 760 GGWXXXXWXXXRXGW 716
GGW R GW
Sbjct: 256 GGWGGWG-RGSRWGW 269
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = +1
Query: 574 PVPXXXXSVYXPXXPPLVLPXXYHXXYXXXLXPPXXPPXPTXXPPLPSTP 723
P P P PP + P + PP PP P PP P P
Sbjct: 33 PPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMP 82
Score = 29.9 bits (64), Expect(2) = 0.20
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +1
Query: 826 PQLPXLXXXXXPXPXPXXXXXPPXPPPXXXXXPPPXP 936
P P P P PP PPP PPP P
Sbjct: 46 PPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMP 82
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Frame = +2
Query: 827 PNXPXXXXPXXXXXXXXPXPXXPXPPXXPX--XXPPPXPP 940
P P P P P P PP P PPP PP
Sbjct: 41 PPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPP 80
Score = 22.6 bits (46), Expect(2) = 0.20
Identities = 10/20 (50%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Frame = +1
Query: 670 PPXXPPXPTX--XPPLPSTP 723
PP PP P PPLP P
Sbjct: 28 PPCPPPPPPMCAPPPLPCPP 47
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 33.1 bits (72), Expect = 0.29
Identities = 22/62 (35%), Positives = 22/62 (35%)
Frame = -1
Query: 940 GXGGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVGXXXXLXRGGRXGGG*RGXXRXA 761
G G GGG GG G G G G G GGR GGG G R
Sbjct: 65 GGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGG-GGGGRGGGGGGGGGRGG 123
Query: 760 GG 755
GG
Sbjct: 124 GG 125
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Frame = -1
Query: 931 GGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVG-XXXXLXRGGRXGGG*RGXXRXAGG 755
GGGG GG G G G G GGR GGG G R GG
Sbjct: 49 GGGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGG 108
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.3 bits (70), Expect = 0.51
Identities = 32/121 (26%), Positives = 33/121 (27%)
Frame = -1
Query: 940 GXGGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVGXXXXLXRGGRXGGG*RGXXRXA 761
G GGGG GG G G G G G GG GGG G
Sbjct: 108 GGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGG 167
Query: 760 GGWXXXXWXXXRXGWTXXEGEX*AXGAXXXVXGXGXSXXDXXVAVPXGGXGAXKPXXGXG 581
GG G + G A G G S P GG G G
Sbjct: 168 GG-------GCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSGGGGCGGGGSSGG 220
Query: 580 G 578
G
Sbjct: 221 G 221
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/88 (27%), Positives = 25/88 (28%)
Frame = -3
Query: 935 GXGGGXXXXXGGGXGGXXXXXGXGXGXXXXXRXGSWGXXXXXXXXXXXXXXXXXXPXGRG 756
G GGG GGG GG G G G G G G G
Sbjct: 84 GGGGGGCGGGGGGCGGGGGCGGGGGGCGGGG-GGCGGGGGGCGGGGGGCGGGGGGGCGGG 142
Query: 755 MXTXRMXXXAXGVDGXGGXXVGXGGXXG 672
+ G G GG G GG G
Sbjct: 143 SSGGCGGGSSGGCGGGGGGGCGGGGGGG 170
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.3 bits (70), Expect = 0.51
Identities = 32/121 (26%), Positives = 33/121 (27%)
Frame = -1
Query: 940 GXGGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVGXXXXLXRGGRXGGG*RGXXRXA 761
G GGGG GG G G G G G GG GGG G
Sbjct: 108 GGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGG 167
Query: 760 GGWXXXXWXXXRXGWTXXEGEX*AXGAXXXVXGXGXSXXDXXVAVPXGGXGAXKPXXGXG 581
GG G + G A G G S P GG G G
Sbjct: 168 GG-------GCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSGGGGCGGGGSSGG 220
Query: 580 G 578
G
Sbjct: 221 G 221
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/88 (27%), Positives = 25/88 (28%)
Frame = -3
Query: 935 GXGGGXXXXXGGGXGGXXXXXGXGXGXXXXXRXGSWGXXXXXXXXXXXXXXXXXXPXGRG 756
G GGG GGG GG G G G G G G G
Sbjct: 84 GGGGGGCGGGGGGCGGGGGCGGGGGGCGGGG-GGCGGGGGGCGGGGGGCGGGGGGGCGGG 142
Query: 755 MXTXRMXXXAXGVDGXGGXXVGXGGXXG 672
+ G G GG G GG G
Sbjct: 143 SSGGCGGGSSGGCGGGGGGGCGGGGGGG 170
>AF068713-9|AAC17800.1| 284|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 68 protein.
Length = 284
Score = 32.3 bits (70), Expect = 0.51
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 105 NTLEYILNCDRFRCSRQECQNL 40
NT++ +NCD FRCS EC ++
Sbjct: 149 NTIDTPMNCDHFRCSFNECYSI 170
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 27.1 bits (57), Expect(2) = 0.56
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +1
Query: 826 PQLPXLXXXXXPXPXPXXXXXPPXPPPXXXXXPPPXP 936
P P P P P PP P PPP P
Sbjct: 91 PPPPPASPCCGPSPVPAPCCPPPPAPAAPCCPPPPPP 127
Score = 23.8 bits (49), Expect(2) = 0.56
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 673 PXXPPXPTXXPPLPSTP 723
P PP P PP P++P
Sbjct: 82 PYVPPAPLPPPPPPASP 98
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = -1
Query: 934 GGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVGXXXXLXRGGRXGGG*RGXXRXAGG 755
GGGGG GG G G G G G GG GGG G GG
Sbjct: 124 GGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGGG 183
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -3
Query: 935 GXGGGXXXXXGGGXGGXXXXXGXGXGXXXXXRXGSWG 825
G GGG GGG GG G G G G G
Sbjct: 143 GGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCG 179
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 826 PQLPXLXXXXXPXPXPXXXXXPPXPPPXXXXXPPPXP 936
P P + P P P PP PP PPP P
Sbjct: 84 PPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPP 120
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 878 PXPXXPXPPXXPXXXPPPXPP 940
P P P PP P PPP PP
Sbjct: 67 PPPICPPPPPPPMPCPPPPPP 87
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Frame = +1
Query: 826 PQLPXLXXXXXPXPXPXXXXXPPXP----PPXXXXXPPPXP 936
P++P P P P PP P PP PPP P
Sbjct: 37 PRMPCAAPMPMPMPMPVCPPPPPCPAQFCPPPPICPPPPPP 77
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 835 PXLXXXXXPXPXPXXXXXPPXPPPXXXXXPPPXP 936
P L P P PP PPP PPP P
Sbjct: 73 PPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIP 106
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 835 PXLXXXXXPXPXPXXXXXPPXPPPXXXXXPPPXP 936
P L P P PP PPP PPP P
Sbjct: 295 PPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIP 328
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/48 (45%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +2
Query: 281 GESDQGLFGKGGYXREFFNDDRGKLTGQAYGXXVL--GPGGXSTSYGG 418
G S G FG GG R FND RG G YG G GG YGG
Sbjct: 173 GSSGGGRFGGGGGDR--FND-RGSRGGDRYGGDRRGGGGGGGGDRYGG 217
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/62 (32%), Positives = 20/62 (32%)
Frame = -1
Query: 940 GXGGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVGXXXXLXRGGRXGGG*RGXXRXA 761
G GGG GG G G G G G GG GGG G A
Sbjct: 14 GSSGGGSRGGYGGGGRGGGGGGYSGGRGGGYGGGGGGGYGGGGYGGGGRGGGRGGSNGSA 73
Query: 760 GG 755
GG
Sbjct: 74 GG 75
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/63 (31%), Positives = 22/63 (34%)
Frame = -1
Query: 940 GXGGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVGXXXXLXRGGRXGGG*RGXXRXA 761
G GG GG GG G G G + G GG GGG G +
Sbjct: 267 GQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGG--GGGWGGQGQQQ 324
Query: 760 GGW 752
GGW
Sbjct: 325 GGW 327
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -3
Query: 935 GXGGGXXXXXGGGXGGXXXXXGXGXGXXXXXRXGSWG 825
G GG GGG GG G G G G WG
Sbjct: 33 GGWGGNRWGGGGGPGGWGNNGGGGWGRGGGRGGGDWG 69
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/89 (24%), Positives = 23/89 (25%)
Frame = -3
Query: 935 GXGGGXXXXXGGGXGGXXXXXGXGXGXXXXXRXGSWGXXXXXXXXXXXXXXXXXXPXGRG 756
G G G GGG G G G G+WG GRG
Sbjct: 43 GGGPGGWGNNGGGGWGRGGGRGGGDWGGNNGGGGNWGGNGGGRGDWGGNGGGGRGGGGRG 102
Query: 755 MXTXRMXXXAXGVDGXGGXXVGXGGXXGG 669
G G G GG GG
Sbjct: 103 DWGGNNNGGGGNWGGGGNNDGGWGGNNGG 131
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/63 (31%), Positives = 22/63 (34%)
Frame = -1
Query: 940 GXGGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVGXXXXLXRGGRXGGG*RGXXRXA 761
G GG GG GG G G G + G GG GGG G +
Sbjct: 230 GQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGG--GGGWGGQGQQQ 287
Query: 760 GGW 752
GGW
Sbjct: 288 GGW 290
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/63 (28%), Positives = 20/63 (31%)
Frame = -1
Query: 940 GXGGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVGXXXXLXRGGRXGGG*RGXXRXA 761
G GGGGG G G G G G GG+ G G +
Sbjct: 184 GGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGG 243
Query: 760 GGW 752
GGW
Sbjct: 244 GGW 246
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/63 (31%), Positives = 22/63 (34%)
Frame = -1
Query: 940 GXGGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVGXXXXLXRGGRXGGG*RGXXRXA 761
G GG GG GG G G G + G GG GGG G +
Sbjct: 229 GQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGG--GGGWGGQGQQQ 286
Query: 760 GGW 752
GGW
Sbjct: 287 GGW 289
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/63 (31%), Positives = 22/63 (34%)
Frame = -1
Query: 940 GXGGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVGXXXXLXRGGRXGGG*RGXXRXA 761
G GG GG GG G G G + G GG GGG G +
Sbjct: 268 GQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGG--GGGWGGQGQQQ 325
Query: 760 GGW 752
GGW
Sbjct: 326 GGW 328
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/63 (28%), Positives = 20/63 (31%)
Frame = -1
Query: 940 GXGGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVGXXXXLXRGGRXGGG*RGXXRXA 761
G GGGGG G G G G G GG+ G G +
Sbjct: 222 GGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGG 281
Query: 760 GGW 752
GGW
Sbjct: 282 GGW 284
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/63 (31%), Positives = 22/63 (34%)
Frame = -1
Query: 940 GXGGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVGXXXXLXRGGRXGGG*RGXXRXA 761
G GG GG GG G G G + G GG GGG G +
Sbjct: 267 GQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGG--GGGWGGQGQQQ 324
Query: 760 GGW 752
GGW
Sbjct: 325 GGW 327
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/62 (32%), Positives = 20/62 (32%)
Frame = -1
Query: 940 GXGGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVGXXXXLXRGGRXGGG*RGXXRXA 761
G GGGG GG G G G G G GG GGG G
Sbjct: 118 GYGGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGG 177
Query: 760 GG 755
GG
Sbjct: 178 GG 179
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/65 (32%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Frame = -1
Query: 940 GXGGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXG---RXVGXXXXLXRGGRXGGG*RGXX 770
G GGGGG GG G G G G +G GG GGG G
Sbjct: 154 GGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGG 213
Query: 769 RXAGG 755
GG
Sbjct: 214 GYGGG 218
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = +2
Query: 254 GGGXVFGTLGESDQGLFGKGGYXREFFNDDRGKLTGQAYGXXVLGPGGXSTSYGG 418
GGG G G G +G GG+ G + G YG +G GG YGG
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGG 217
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 29.9 bits (64), Expect = 2.7
Identities = 25/90 (27%), Positives = 26/90 (28%), Gaps = 1/90 (1%)
Frame = -3
Query: 935 GXGGGXXXXXGGGXGGXXXXXGXGXGXXXXXRXGSWGXXXXXXXXXXXXXXXXXXPXGRG 756
G GGG GGG GG G G G G+ G G G
Sbjct: 53 GGGGGGGGGGGGGFGGGNGGFGGGGGGNYGGGGGNQGGGGGGGFNFNDIGGLINSMGGGG 112
Query: 755 MXTXRMXXXAXGV-DGXGGXXVGXGGXXGG 669
R G D GG GG GG
Sbjct: 113 GGGQRQGGGGGGFGDILGGIGSLIGGGGGG 142
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 826 PQLPXLXXXXXPXPXPXXXXXPPXPPPXXXXXPPP 930
P +P + P P P PP PPP PPP
Sbjct: 696 PGVPPMFNLNAPPP-PGIPGYPPAPPPPGVGPPPP 729
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +2
Query: 827 PNXPXXXXPXXXXXXXXPXPXXPXPPXXPXXXPPPXPP 940
P P P P P P PP PPP PP
Sbjct: 559 PIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPPP 596
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Frame = +1
Query: 832 LPXLXXXXXPXPXPXXXXXPPXPPP---XXXXXPPPXP 936
LP + P P P PP PPP PPP P
Sbjct: 751 LPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 859 PXPXPXXXXXPPXPPPXXXXXPPPXP 936
P P PP PPP PPP P
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPP 773
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Frame = +1
Query: 832 LPXLXXXXXPXPXPXXXXXPPXPPP---XXXXXPPPXP 936
LP + P P P PP PPP PPP P
Sbjct: 751 LPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 859 PXPXPXXXXXPPXPPPXXXXXPPPXP 936
P P PP PPP PPP P
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPP 773
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/63 (33%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Frame = -1
Query: 940 GXGGGGGXXXXXGGXXXGXXGXXXXXXXGXXXXGRXVGXXXXLXRGGR-XGGG*RGXXRX 764
G GG G GG G G G G G RGG GGG RG
Sbjct: 511 GYGGDMGYGAYGGGYGGGYGGPGAYGDFGAYGGGGFRGGMRGSPRGGMGGGGGFRGGPPG 570
Query: 763 AGG 755
GG
Sbjct: 571 RGG 573
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Frame = +1
Query: 832 LPXLXXXXXPXPXPXXXXXPPXPPP---XXXXXPPPXP 936
LP + P P P PP PPP PPP P
Sbjct: 334 LPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 859 PXPXPXXXXXPPXPPPXXXXXPPPXP 936
P P PP PPP PPP P
Sbjct: 331 PGGLPPISGGPPPPPPPPGGCPPPPP 356
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -3
Query: 935 GXGGGXXXXXGGGXGGXXXXXGXGXGXXXXXRXGSWG 825
G GGG GGG GG G G G G G
Sbjct: 789 GGGGGNGGSGGGGGGGGGGSGGSGGGGSNSNSGGGGG 825
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = +1
Query: 826 PQLPXLXXXXXPXPXPXXXXXPPXPPPXXXXXPPPXP 936
P P + P P PP PPP PP P
Sbjct: 278 PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP 314
Score = 28.3 bits (60), Expect = 8.4
Identities = 25/97 (25%), Positives = 29/97 (29%), Gaps = 8/97 (8%)
Frame = +1
Query: 670 PPXXPPXPTXXP---PLPSTPXAXKXXRSVXIPLPXGXXXXXXXXXXXXXXXXXXPQLPX 840
PP PP P+ P P+P TP P P P +P
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRP-----PPPPSSGMWPPPPPPPPGRTPGPPGMPG 315
Query: 841 LXXXXXP--XPXPXXXXXPPXPPP---XXXXXPPPXP 936
+ P P PP PPP PPP P
Sbjct: 316 MPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 352
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 607 PXXPPLVLPXXYHXXYXXXLXPPXXPPXPTXXPP-LPSTPXAXKXXRSVXIPLP 765
P PP +P PP PP P PP P +P R+ P+P
Sbjct: 139 PPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIP 192
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = +1
Query: 826 PQLPXLXXXXXPXPXPXXXXXPPXPPPXXXXXPPPXP 936
P P + P P PP PPP PP P
Sbjct: 288 PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP 324
Score = 28.3 bits (60), Expect = 8.4
Identities = 25/97 (25%), Positives = 29/97 (29%), Gaps = 8/97 (8%)
Frame = +1
Query: 670 PPXXPPXPTXXP---PLPSTPXAXKXXRSVXIPLPXGXXXXXXXXXXXXXXXXXXPQLPX 840
PP PP P+ P P+P TP P P P +P
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRP-----PPPPSSGMWPPPPPPPPGRTPGPPGMPG 325
Query: 841 LXXXXXP--XPXPXXXXXPPXPPP---XXXXXPPPXP 936
+ P P PP PPP PPP P
Sbjct: 326 MPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 362
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -3
Query: 935 GXGGGXXXXXGGGXGGXXXXXGXGXGXXXXXRXGSWG 825
G GGG GGG GG G G G G G
Sbjct: 89 GCGGGGCGGGGGGCGGGGGCGGGGGGGCGGGGGGGCG 125
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 859 PXPXPXXXXXPPXPPPXXXXXPPPXP 936
P P P PP P P PPP P
Sbjct: 244 PPPSPVCMPPPPPPCPMPIPCPPPPP 269
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 28.3 bits (60), Expect = 8.4
Identities = 22/81 (27%), Positives = 26/81 (32%)
Frame = +1
Query: 529 PTTPLSXXXXGXXRVPVPXXXXSVYXPXXPPLVLPXXYHXXYXXXLXPPXXPPXPTXXPP 708
P P + G PVP P PP++ P PP P PT P
Sbjct: 382 PARPKADPCPGGFCAPVPQAPQQE-RPTPPPVLAPVI-----NTATQPPLPQPYPTRYRP 435
Query: 709 LPSTPXAXKXXRSVXIPLPXG 771
P P A V P+ G
Sbjct: 436 APPPPPACDGQGCVNPPVVSG 456
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,529,069
Number of Sequences: 27780
Number of extensions: 285447
Number of successful extensions: 2840
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1967
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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