Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_P21
(924 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.043
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.075
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.93
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 3.7
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 27 4.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.6
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.5 bits (73), Expect = 0.043
Identities = 18/64 (28%), Positives = 19/64 (29%)
Frame = +2
Query: 731 PPPPYPXXXXCPXSSQXPPPLXPYXXTLPXXPTPXXXPPXXPRXXPXTXXXXSXXXPPXX 910
P PP P P +S P P P P P PP P PP
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187
Query: 911 PPXP 922
P P
Sbjct: 188 PSLP 191
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.7 bits (71), Expect = 0.075
Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Frame = +2
Query: 737 PPYPXXXXCPXSSQXPPPLXPYXXT-LPXXPTPXXXPPXXPRXXPXTXXXXSXXXPPXXP 913
PP P S+ PPL T P PTP PP P P + P P
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 914 PXP 922
P P
Sbjct: 448 PLP 450
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Frame = +2
Query: 731 PPPPYPXXXXCPXSSQXPPPL-XPYXXTLPXXPTPXXXPPXXPRXXPXTXXXXSXXXPPX 907
PPPP P P + + PPPL + P P P P P + P
Sbjct: 361 PPPPPPRS--APSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVP 418
Query: 908 XPP 916
PP
Sbjct: 419 TPP 421
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/38 (31%), Positives = 12/38 (31%)
Frame = +2
Query: 734 PPPYPXXXXCPXSSQXPPPLXPYXXTLPXXPTPXXXPP 847
PP P P PPL P P P P P
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.1 bits (62), Expect = 0.93
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = -3
Query: 916 GGXXGXXGXRXXXXGPWVXXGXXXGXRGGGRXXGEGXXVGX*GGR 782
GG G G R G G G RGG R G G G GGR
Sbjct: 9 GGRGGSRGGRGGFNG---GRGGFGGGRGGARGGGRGGARGGRGGR 50
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +2
Query: 731 PPPPYPXXXXCPXSSQXPPPLXPYXXTL-PXXPTPXXXPPXXP 856
P PP P P + PP+ P L P P P P P
Sbjct: 504 PLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVP 546
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 26.6 bits (56), Expect = 4.9
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Frame = +2
Query: 359 RGETFVHTNELQMEEAVKVF--RVLYYAKDFXVFMRTACWMRXRIXGGMFXYPFTAACFH 532
RG VH ++ A+K R LY K M A + + G ++ YP T
Sbjct: 153 RGNYVVHQPS-EIPTAIKALGDRPLYVEKFVPFSMEIAVMVVRSLDGKVYAYPTTETIQK 211
Query: 533 RTXCXGLYLPA--PYEI 577
C +Y PA P+ I
Sbjct: 212 DNVCHLVYAPARLPFSI 228
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 6.5
Identities = 23/96 (23%), Positives = 27/96 (28%), Gaps = 5/96 (5%)
Frame = +2
Query: 644 PPXHPVLXKXYXIPXTDDHLXLXDCXXXXPPPPYPXXXX-CPXSSQX----PPPLXPYXX 808
PP + K +P PP P P P SS PPP+
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSS 1071
Query: 809 TLPXXPTPXXXPPXXPRXXPXTXXXXSXXXPPXXPP 916
+P P P PP S PP P
Sbjct: 1072 EIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/64 (25%), Positives = 17/64 (26%)
Frame = +2
Query: 731 PPPPYPXXXXCPXSSQXPPPLXPYXXTLPXXPTPXXXPPXXPRXXPXTXXXXSXXXPPXX 910
P P P S PP+ P P P PP S P
Sbjct: 1004 PAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAP 1063
Query: 911 PPXP 922
PP P
Sbjct: 1064 PPVP 1067
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 731 PPPPYPXXXXCPXSSQXPPPLXPY 802
PPPP P P S PPP Y
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGY 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,269
Number of Sequences: 5004
Number of extensions: 48158
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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