Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_P17
         (981 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.76 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.0  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   4.0  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   5.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.3  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.76
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +2

Query: 737 PPPXHPPPXXTAPPHXXPX*HXTPXXPXPP 826
           PPP   PP   AP    P  +  P  P PP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = +3

Query: 741 PPXIPPLXPXPPHTXSQXNXQPPXPXPPXXHRXGSPP 851
           PP  PP         +    +PP P PP     G PP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP 326



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
 Frame = +3

Query: 738 PPPXIPPLXPX---PPHTXSQXNXQ-PPXPXPPXXHRXGSPP 851
           PPP  PP       PP      N   PP P PP  +  GS P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP 352


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 741 PPXIPPLXPXPPHTXSQXNXQPPXPXPP 824
           PP  PP  P PP    +   QPP P PP
Sbjct: 5   PPGNPP--PPPPPPGFEPPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +2

Query: 734  PPPPXHPPPXXTAPPHXXPX*HXTPXXPXPP 826
            PPPP   PP  +APP         P  P PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPA----GPPSAPPPP 1734


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +2

Query: 734 PPPPXHPPPXXTAPPHXXPX*HXTPXXPXPP 826
           PPPP H  P    PP   P  H  P    PP
Sbjct: 208 PPPPMHHKPGEHMPP---PPMHHEPGEHMPP 235



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +2

Query: 734 PPPPXHPPPXXTAPPHXXPX*HXTPXXPXPP 826
           PPPP H  P    PP   P  H  P    PP
Sbjct: 234 PPPPMHHEPGEHMPP---PPMHHEPGEHMPP 261



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +2

Query: 734 PPPPXHPPPXXTAPPHXXPX*HXTPXXPXPP 826
           PPPP H  P    PP   P  H  P    PP
Sbjct: 260 PPPPMHHEPGEHMPP---PPMHHEPGEHMPP 287



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +2

Query: 734 PPPPXHPPPXXTAPPHXXPX*HXTPXXPXPP 826
           PPPP H  P    PP   P  H  P    PP
Sbjct: 286 PPPPMHHEPGEHMPP---PPMHHEPGEHMPP 313



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +2

Query: 734 PPPPXHPPPXXTAPPHXXPX*HXTPXXPXPP 826
           PPPP H  P    PP   P  H  P    PP
Sbjct: 312 PPPPMHHEPGEHMPP---PPMHHEPGEHMPP 339


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 765  PXPPHTXSQXNXQPPXPXPPXXHRXGSP 848
            P   H+    N  P  P PP  H+ G+P
Sbjct: 961  PVSSHSEGLNNRLPISPLPPQLHKTGTP 988


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
 Frame = +3

Query: 741 PPXIP----PLXPXPPHTXSQXNXQPPXPXPPXXHRXGS 845
           PP  P    P  P PP   +     PP P PP     GS
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGS 790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,838
Number of Sequences: 5004
Number of extensions: 21789
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)