Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_P16
         (1007 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.34 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   0.54 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.59 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   0.78 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.8  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   7.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    22   8.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
 Frame = -1

Query: 248 PPPXXFLFXPPPPXPP----XXXPPPP 180
           PPP   +  PPPP PP       PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 251 PPPPXXFLFXPPPPXPPXXXPPP 183
           PPPP   +  P P   P   PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPP 754



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 251 PPPPXXFLFXPPPPXPPXXXPPPPL 177
           PPPP   +   P P P    PP P+
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPI 757



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +2

Query: 383 PPGXGXGGXTPXPXTXPPPPPP 448
           PP  G  G  P P   PPPPPP
Sbjct: 765 PPPPGVAGAGPPP---PPPPPP 783



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 251 PPPPXXFLFXPPPPXPPXXXPPPP 180
           PPPP   +    PP PP   PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP---PPPP 783



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
 Frame = -1

Query: 251 PPPPXXFLFXP-------PPPXPPXXXPPPP 180
           PPPP   +  P       PPP P    PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect(2) = 0.54
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +3

Query: 342 KAPXTPGPXXXXXXPPGXGGGXXLPRXKPXPPPP 443
           + P  P P       P  G G       P PPPP
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 23.4 bits (48), Expect(2) = 0.54
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 540 PXGXPPPPHXPXXTXPTXXRXPXP 611
           P G   PP  P  + P+  R P P
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPP 378


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -2

Query: 454 RXGXGGGGXGXXRGSXXPPPXPGG 383
           R   GGG  G   GS  PPP PGG
Sbjct: 183 RGHNGGGFGGFGGGSGGPPPGPGG 206



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -3

Query: 447 GGGGGGXVXGXGVXPPXPXPGGXXXXXRGRG 355
           GGG GG   G G  PP P   G      G G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEG 217


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 169 GKXRGGGGXXXGGXGGGGXKRNXXGGGG 252
           G  RGG G   GG GG G  R    GGG
Sbjct: 12  GGSRGGRGGFNGGRGGFGGGRGGARGGG 39



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 178 RGGGGXXXGGXGGGGXKRNXXGGG 249
           RGG G   GG GG    R   GGG
Sbjct: 8   RGGRGGSRGGRGGFNGGRGGFGGG 31


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -1

Query: 251 PPPPXXFLFXPPPPXPPXXXPPPP 180
           PPPP    F PP   PP   PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPP---PPPP 30



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 540 PXGXPPPPHXPXXTXPTXXRXPXPP 614
           P G PPPP  P    P     P PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 540 PXGXPPPPHXPXXTXPTXXRXPXPP 614
           P   PPPP  P    P+    P PP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 221  PPPPXPPXXXPPPPLFXP 168
            P PP PP   PPPP   P
Sbjct: 1705 PTPPPPPMSVPPPPSAPP 1722



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
 Frame = -1

Query: 248  PPPXXFLFXPPPPXP-----PXXXPPPPL 177
            PPP      PPP  P     P   PPPPL
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 251  PPPPXXFLFXPPPPXPPXXXPPPPLFXP 168
            PPPP   +  PPPP  P     PP   P
Sbjct: 1707 PPPPP--MSVPPPPSAPPMPAGPPSAPP 1732


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
 Frame = +1

Query: 169 GKXRGGGGXXXGGXGG------GGXKRNXXGGG 249
           G  RGG G   GG GG      GG  R   GGG
Sbjct: 141 GGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
 Frame = +1

Query: 178 RGGGGXXXGGXGG-----GGXKRNXXGGG 249
           RGG G   GG GG     GG  R   GGG
Sbjct: 137 RGGRGGFRGGRGGSRGGFGGNSRGGFGGG 165


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 22.2 bits (45), Expect(2) = 8.2
 Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
 Frame = +3

Query: 345  APXTPGPXXXXXXPPGXGGGXXLPRXK-PXPPPPXP 449
            AP  P P       P   G   +P+     PP P P
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136



 Score = 21.8 bits (44), Expect(2) = 8.2
 Identities = 9/27 (33%), Positives = 9/27 (33%)
 Frame = +3

Query: 546  GXPPPPHXPXXTXPTXXRXPXPPXPXP 626
            G PP P       P       PP P P
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPKP 1203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,430,599
Number of Sequences: 5004
Number of extensions: 17818
Number of successful extensions: 250
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 523262732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)