Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_P15
         (955 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.25 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.33 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.34 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.0  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   9.4  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   9.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   9.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   9.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   9.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.25
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = +1

Query: 667 GPPPXPX--PPPXPPPXXXXPPPPXPSXFFSXPXXG 768
           G PP P   PPP  PP    PP   PS     P  G
Sbjct: 37  GSPPNPSQGPPPGGPP--GAPPSQNPSQMMISPASG 70



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 12/36 (33%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
 Frame = +1

Query: 496 PXPPPPPXXXXXPPXXXFPPXXGVXRPP--PPTXXP 597
           P P P P      P    PP      PP  PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +2

Query: 788 PXPXXXXPXXPXXXPXXPFXXPPPPPPPXXXP 883
           P P           P  P   PPP  PP   P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.33
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 847  PPPPPPPP 870
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 671  PPPXPPPP 694
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 674  PPXPPPPP 697
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 846  PXPPPPPP 869
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 673 PPXPXPPPXPP 705
           PP P PPP PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 846 PXPPPPPPXXXXP 884
           P PPPPPP    P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 24.2 bits (50), Expect(2) = 0.34
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 847 PPPPPPPPXXXPP 885
           P PPPPPP    P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 671 PPPXPPPPP 697
           P P PPPPP
Sbjct: 339 PKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 859 PPPPXXXPPPP 891
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 20.6 bits (41), Expect(2) = 0.34
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 706 PXXXXPPPPXPS 741
           P    PPPP PS
Sbjct: 338 PPKPAPPPPPPS 349


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 843  SPXPPPPPP 869
            SP PPPPPP
Sbjct: 1856 SPEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 847  PPPPPPPP 870
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 673 PPXPXPPPXPPPXXXXPPPPXP 738
           PP P P   PP      PP  P
Sbjct: 152 PPTPFPRFIPPNAYRFRPPQNP 173


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 673 PPXPXPPPXPPPXXXXPPPPXP 738
           PP P P   PP      PP  P
Sbjct: 152 PPTPFPRFIPPNAYRFRPPQNP 173


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 673 PPXPXPPPXPPPXXXXPPPPXP 738
           PP P P   PP      PP  P
Sbjct: 390 PPTPFPRFIPPNAYRFRPPQNP 411


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 373 LDTKKLLLRLSVLPRASDFYKIR 305
           LDTKK   ++S L   +D Y ++
Sbjct: 379 LDTKKWNNKISALRALNDLYNVK 401


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 162 SFDECMHIGEADSQQDNQQLVHFGY 88
           S D  + +   D+Q+DN Q++ + Y
Sbjct: 298 SKDSLVFVDNHDTQRDNPQILTYKY 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 276,691
Number of Sequences: 438
Number of extensions: 13214
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)