Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_P10
(975 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.54
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.54
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 29 3.8
AF068713-12|AAC17802.1| 139|Caenorhabditis elegans Ground-like ... 29 6.6
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 8.8
AF067612-1|AAD36954.1| 780|Caenorhabditis elegans Egg laying de... 28 8.8
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 28 8.8
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 28 8.8
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 8.8
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 8.8
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 28 8.8
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.3 bits (70), Expect = 0.54
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXGXNG 784
GGG GGG GGCG G G G
Sbjct: 135 GGGGCGGGSSGGCGGGSSGGCGGGG 159
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXG 793
GGG GGG GGCG G G
Sbjct: 127 GGGGCGGGGGGGCGGGSSGGCG 148
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXG 793
GGG GGG GGCG G G
Sbjct: 159 GGGGCGGGGGGGCGGGSSGGGG 180
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXG 793
GGG GGG GGCG G G
Sbjct: 26 GGGGGGGGCGGGCGGGCGGGGG 47
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.3 bits (70), Expect = 0.54
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXGXNG 784
GGG GGG GGCG G G G
Sbjct: 135 GGGGCGGGSSGGCGGGSSGGCGGGG 159
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXG 793
GGG GGG GGCG G G
Sbjct: 127 GGGGCGGGGGGGCGGGSSGGCG 148
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXG 793
GGG GGG GGCG G G
Sbjct: 159 GGGGCGGGGGGGCGGGSSGGGG 180
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXG 793
GGG GGG GGCG G G
Sbjct: 26 GGGGGGGGCGGGCGGGCGGGGG 47
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 31.5 bits (68), Expect = 0.94
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXGXNG 784
GGG GGG GGCG G G G
Sbjct: 104 GGGGCGGGGGGGCGGGGGGGCGGGG 128
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXGXNGXY 778
GGG GGG GGCG G G G Y
Sbjct: 112 GGGGCGGGGGGGCGGG---GGGGGGGY 135
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXG 793
GGG GGG GGCG G G
Sbjct: 166 GGGGCGGGGGGGCGGGGGGGCG 187
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXG 793
GGG GGG GGCG G G
Sbjct: 24 GGGGGGGGCGGGCGGGGGCGGG 45
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 855 GGRXGGGXXGGCGAXQXPGXGXNG 784
GG GGG GGCG G G G
Sbjct: 130 GGGCGGGGGGGCGGGGGGGCGGGG 153
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXGXNGXY 778
GG GGG GGCG G G G Y
Sbjct: 35 GGCGGGGGCGGGCGYGGGGGCGYGGGY 61
>AF068713-12|AAC17802.1| 139|Caenorhabditis elegans Ground-like
(grd related) protein28 protein.
Length = 139
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 852 GRXGGGXXGGCGAXQXPGXGXNGXYTRS 769
G GGG GCGA P G G RS
Sbjct: 23 GMMGGGGGCGCGAPPPPSCGCGGRKKRS 50
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXGXNGXY 778
GGG G GG GA PG G G Y
Sbjct: 226 GGGWGGPAQRGGPGAYGGPGGGGQGGY 252
>AF067612-1|AAD36954.1| 780|Caenorhabditis elegans Egg laying
defective protein 4,isoform a protein.
Length = 780
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 861 TGGGRXGGGXXGGCGAXQXPGXGXNG 784
+GGG GGG GG G PG G G
Sbjct: 9 SGGGGGGGGASGGAGGG-APGGGGGG 33
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXGXNGXY 778
GGG G GG GA PG G G Y
Sbjct: 188 GGGWGGPAQRGGPGAYGGPGGGGQGGY 214
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXGXNGXY 778
GGG G GG GA PG G G Y
Sbjct: 188 GGGWGGPAQRGGPGAYGGPGGGGQGGY 214
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXGXNGXY 778
GGG G GG GA PG G G Y
Sbjct: 226 GGGWGGPAQRGGPGAYGGPGGGGQGGY 252
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXGXNGXY 778
GGG G GG GA PG G G Y
Sbjct: 226 GGGWGGPAQRGGPGAYGGPGGGGQGGY 252
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -1
Query: 858 GGGRXGGGXXGGCGAXQXPGXGXNGXY 778
GGG GGG GG P G G Y
Sbjct: 207 GGGMGGGGYGGGGDGGYGPSGGYGGGY 233
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,056,677
Number of Sequences: 27780
Number of extensions: 242983
Number of successful extensions: 1118
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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