Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_P09
(916 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108... 108 5e-24
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286... 104 1e-22
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 100 1e-21
06_02_0005 + 10502478-10503446 33 0.42
09_03_0089 + 12265916-12267232 30 2.9
09_02_0622 - 11310941-11311472,11312776-11312813,11312875-113129... 30 2.9
04_01_0039 + 455760-457631 30 2.9
02_03_0279 + 17250347-17252098 29 6.8
>02_01_0156 -
1086750-1086920,1087680-1087847,1087935-1088171,
1088763-1089073,1089343-1089571
Length = 371
Score = 108 bits (260), Expect = 5e-24
Identities = 58/143 (40%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Frame = +1
Query: 88 AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKI 267
A+II G VA I ++ ++ +++ G P LA++ VG R+DS Y+R K KA E +
Sbjct: 80 AKIIDGKLVAKQIREEIAVEIAKMKDA-IGVVPGLAVILVGSRKDSQTYVRNKKKACEAV 138
Query: 268 GIAAEHIRLPRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKD 447
GI + + LP D +E E+L I + N PSVHGI+VQ+PL H ++ + +AVS +KD
Sbjct: 139 GIKSYEVNLPEDSSEDEVLKHIATFNSDPSVHGILVQLPL--PHHMNDENILNAVSIEKD 196
Query: 448 VDGLNTINEGRVAV-GDLSGFIP 513
VDG + +N GR+A+ G F+P
Sbjct: 197 VDGFHPLNIGRLAMQGRDPFFVP 219
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/75 (40%), Positives = 42/75 (56%)
Frame = +2
Query: 518 TPAGCVELIKKXGVTIAGKNVVVLXPSRXVGXPVSXLLKWEHATVXVCHSKTXXLXEITX 697
TP GC+EL+ + GV I GK VV+ S VG P + LL+ +ATV + HS T EIT
Sbjct: 221 TPKGCMELLHRYGVEIKGKRAVVIGRSNIVGMPAALLLQKANATVSIVHSNTKKPEEITR 280
Query: 698 TXXXLVVAIXPPXMV 742
++ A+ +V
Sbjct: 281 QADIVIAAVGVANLV 295
>05_01_0365 +
2865496-2865588,2865673-2865856,2866791-2866948,
2867035-2867247,2867330-2867560
Length = 292
Score = 104 bits (249), Expect = 1e-22
Identities = 55/135 (40%), Positives = 84/135 (62%)
Frame = +1
Query: 85 MAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEK 264
MAQII G VA I ++ V L S + P LA+V VG R+DS Y++MK KA +
Sbjct: 1 MAQIIDGKAVAADIRREVAADVAALSSAHN-LVPGLAVVIVGSRKDSQTYVQMKRKACAE 59
Query: 265 IGIAAEHIRLPRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDK 444
+GI + + L DI+E L+A++ LN P+VHGI+VQ+PL I+ ++ + +S +K
Sbjct: 60 VGIRSVDVDLAEDISEAALVAEVHRLNADPAVHGILVQLPLPKH--INEEKILNEISLEK 117
Query: 445 DVDGLNTINEGRVAV 489
DVDG + +N G++A+
Sbjct: 118 DVDGFHPLNIGKLAM 132
Score = 58.8 bits (136), Expect = 6e-09
Identities = 31/75 (41%), Positives = 40/75 (53%)
Frame = +2
Query: 518 TPAGCVELIKKXGVTIAGKNVVVLXPSRXVGXPVSXLLKWEHATVXVCHSKTXXLXEITX 697
TP GC+EL+ + GVTI GK VV+ S VG PVS LL ATV + HS+T I
Sbjct: 143 TPKGCMELLTRSGVTINGKRAVVVGRSNIVGLPVSLLLLKADATVSIVHSRTPNPESIVR 202
Query: 698 TXXXLVVAIXPPXMV 742
++ A M+
Sbjct: 203 EADIVIAAAGQAMMI 217
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 100 bits (240), Expect = 1e-21
Identities = 53/134 (39%), Positives = 81/134 (60%)
Frame = +1
Query: 88 AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKI 267
A II G VA I + ++V ++++ G P LA+V VG R DS Y+R K+K E++
Sbjct: 98 ATIIDGKSVAEDIRFQIAEEVRQMKNA-VGHVPGLAVVLVGDRRDSESYVRYKIKGCEEV 156
Query: 268 GIAAEHIRLPRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKD 447
GI + LP + TE ++ ++ NE PSVHGI+VQ+PL +D R+ A+S +KD
Sbjct: 157 GIKSLLAELPGNCTEDVVVDSVSRFNEDPSVHGILVQLPLPQH--MDEERILSAISLEKD 214
Query: 448 VDGLNTINEGRVAV 489
VDG + +N G +A+
Sbjct: 215 VDGFHPLNVGNLAL 228
Score = 52.0 bits (119), Expect = 6e-07
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = +2
Query: 530 CVELIKKXGVTIAGKNVVVLXPSRXVGXPVSXLLKWEHATVXVCHSKTXXLXEITXTXXX 709
C+EL+ + G+ + GK+V V+ S+ VG P S LL+ HATV + H+ T EIT
Sbjct: 243 CLELLLQSGIELMGKHVTVIGRSKVVGLPTSLLLQRHHATVSIIHAFTTNPEEITRQSDI 302
Query: 710 LVVA 721
++ A
Sbjct: 303 VISA 306
>06_02_0005 + 10502478-10503446
Length = 322
Score = 32.7 bits (71), Expect = 0.42
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +1
Query: 46 GIGSTNETVLWAKMAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDS 225
G+G E W ++SG E+ G ++ + R R+ G E A+ + G S
Sbjct: 252 GVGVWMEQWSWDGEEWLVSGEEIGGKVKEMMADDAVRERAAKVGEEAAKAVAEGGTSHTS 311
Query: 226 NVYIRMKLKAA 258
+ KLKAA
Sbjct: 312 MLEFVAKLKAA 322
>09_03_0089 + 12265916-12267232
Length = 438
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 194 ASLGSKPDHFERSLVTC*RRSFSIDPATSIPDIICAILAQRTVSLVDPIP 45
ASL ++ DH S + R + + DPA+S+P + AQ+ + P P
Sbjct: 182 ASLRTRFDHLFPSPASALRSAAAGDPASSLPPYLLRPFAQKLPTAASPFP 231
>09_02_0622 -
11310941-11311472,11312776-11312813,11312875-11312926,
11313891-11314270
Length = 333
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 280 EHIRLPRDITEIELLAKITSLNESPSVHGIIV-QMPLDSDHA 402
+HIR+PRD+ + TS++ + +VH V Q+P ++ A
Sbjct: 192 DHIRVPRDVLRTAITTSATSVHLNITVHAASVGQLPPPTERA 233
>04_01_0039 + 455760-457631
Length = 623
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 331 ITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVS-PDKDVDGLNTINEGRVAVGDLSG 504
++ LNE P+++G +V + DSD ++ + DAV+ P +D + G LSG
Sbjct: 469 VSRLNEKPTINGTLVDITCDSDGKVEKF-IRDAVTLPLHPLDDAAAEHGGYYVAALLSG 526
>02_03_0279 + 17250347-17252098
Length = 583
Score = 28.7 bits (61), Expect = 6.8
Identities = 32/116 (27%), Positives = 44/116 (37%)
Frame = +1
Query: 226 NVYIRMKLKAAEKIGIAAEHIRLPRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAI 405
+V++R + + EHI L EL A T+ S S G+ + L SDH
Sbjct: 263 DVFLRASCPMCSRRHVLLEHIALGY-FPYTELAAASTAKLPSASP-GLCLN--LASDHGP 318
Query: 406 DAHRVTDAVSPDKDVDGLNTINEGRVAVGDLSGFIPXHSGRVRGTD*EXRRHYSWQ 573
A +V N+GR V L GF+P S R HY +Q
Sbjct: 319 FAIHHVRLYVDGVEVSHPELYNDGRYVVHGLHGFLPPLSHGSCSHGSNHRHHYHYQ 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,494,043
Number of Sequences: 37544
Number of extensions: 396155
Number of successful extensions: 914
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -