Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_P09
         (916 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging ...   130   2e-30
AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical ...    31   1.5  
Z50741-1|CAA90609.1|  395|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF039049-11|AAB94246.1|  499|Caenorhabditis elegans Cytochrome p...    30   2.0  
U80033-4|AAC48198.2|  467|Caenorhabditis elegans Hypothetical pr...    29   6.1  
U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate fi...    28   8.1  

>U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging
           adult overexpressionprotein 3 protein.
          Length = 303

 Score =  130 bits (313), Expect = 2e-30
 Identities = 65/138 (47%), Positives = 90/138 (65%)
 Frame = +1

Query: 85  MAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEK 264
           +A+I+SG+E +  + +D+ Q++ + R     F   LAIVQVG R DSNVYI  KLK A++
Sbjct: 2   VAEIVSGLEYSKKVLHDVGQKIAKTREHHPNFHAVLAIVQVGNRSDSNVYINSKLKKAKE 61

Query: 265 IGIAAEHIRLPRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDK 444
           IG   + I+LP  IT+ +L  +I +LN    + GII+Q+PLD  H IDA  V D + P K
Sbjct: 62  IGADGKLIKLPDTITQGDLKREIMALNHDNEIDGIIIQLPLDCKHEIDADSVIDLIDPLK 121

Query: 445 DVDGLNTINEGRVAVGDL 498
           DVDGL  IN GR+A G+L
Sbjct: 122 DVDGLTRINAGRLARGEL 139



 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
 Frame = +2

Query: 509 FLXTPAGCVELIKKX---GVTIAGKNVVVLXPSRXVGXPVSXLLKWEHATVXVCHSKTXX 679
           F  TP GC+ L+++       ++GK VVVL  S+ VG P + L  W H TV +CHSKT  
Sbjct: 144 FPCTPFGCLYLVQQATGDANFVSGKEVVVLGRSKIVGSPAAALFLWHHGTVTICHSKTPN 203

Query: 680 LXEITXTXXXLVVAI 724
           L E       L+VAI
Sbjct: 204 LKEKCLRADILIVAI 218


>AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical
           protein Y32B12B.2 protein.
          Length = 789

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 29/102 (28%), Positives = 45/102 (44%)
 Frame = +1

Query: 295 PRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTINE 474
           PRD+TE+E    I+ L E  ++ G+ V++  D D  +D     D    D++ D  NT   
Sbjct: 581 PRDLTELEEELGISILEE--TLDGMNVELLDDDDWIVDDDNDEDGECIDEEEDYDNTEIV 638

Query: 475 GRVAVGDLSGFIPXHSGRVRGTD*EXRRHYSWQKCGSAXAES 600
                 +L G     +   R +D   RRH  W+K      +S
Sbjct: 639 YESEEDELDGL---EAKLERESD---RRHKKWEKKNKVMIDS 674


>Z50741-1|CAA90609.1|  395|Caenorhabditis elegans Hypothetical
           protein F55G7.1 protein.
          Length = 395

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 189 PGLEARPF*TQPRHLLTQVIFYRSCNFNPRYNLCH 85
           P     PF +QP+H+     F++S N N  ++LC+
Sbjct: 57  PNFRRVPFSSQPQHVSNAQSFHQSPNSNDSFSLCY 91


>AF039049-11|AAB94246.1|  499|Caenorhabditis elegans Cytochrome p450
           family protein 35B2 protein.
          Length = 499

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -2

Query: 450 NIFIRRDSISDSMSVDRVVRIKGHLNNDAVNGRRFVQTRDF 328
           NI + RDS+ + +  +   R +  ++ DAVNG+  VQT DF
Sbjct: 134 NIGVGRDSMEERILEELDARCE-EIDADAVNGKTVVQTSDF 173


>U80033-4|AAC48198.2|  467|Caenorhabditis elegans Hypothetical
           protein T23H2.4 protein.
          Length = 467

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 4/137 (2%)
 Frame = +1

Query: 49  IGSTNETVLWAKMAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSN 228
           IGS NE V+W +     S I  +   +N   + +  L S   G    L +  + G  D  
Sbjct: 285 IGSMNEKVIWTEKED--SSIPDSTGTQNGWNRVLISLESVPKGIPVILILKSITGANDFV 342

Query: 229 VYIRMKLKAAEKIGIAAEHIRLPRDITEIELLAKITSLN--ESPSVHGIIVQMPLDSDHA 402
            +  + L   E   +  + +  P    +   L ++T+L   +   +  I+ Q P+ +   
Sbjct: 343 AFSSIDLVDGESKTLTCDQVTSPVQ-PQSNQLVRLTALQNLKMLPIESILYQPPISTTSP 401

Query: 403 IDAHRV--TDAVSPDKD 447
           I    +  T ++S + D
Sbjct: 402 ISLFPIPPTPSISFNSD 418


>U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate
           filament, d protein 2 protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 82  KMAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLA 195
           K+ +I  G E   SI+N  R+++ R+RS  + F  +L+
Sbjct: 288 KITEIKKGSESYSSIQNQAREEILRIRSIVNEFRGKLS 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,345,414
Number of Sequences: 27780
Number of extensions: 330597
Number of successful extensions: 645
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)