Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_P08
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   3.3  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.4  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.4  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   4.4  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.4  

>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 629 PRXPPLXXVXGPPPXHXPXXXXAPPP 706
           P  PP+  +  PPP   P    APPP
Sbjct: 696 PGVPPMFNLNAPPPPGIPGYPPAPPP 721


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = +3

Query: 639 PLXGGXXXPPPXTXLXXXXPPPPXXXRXXPXXXGXIGXPXP 761
           P  G    PPP        PPPP      P   G  G P P
Sbjct: 279 PTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 319


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
 Frame = +3

Query: 639 PLXGGXXXPPPXTXLXXXX--PPPPXXXRXXPXXXGXIGXPXPXXG 770
           P+ GG   PPP   L      PPPP      P   G    P P  G
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +3

Query: 639 PLXGGXXXPPPXTXLXXXXPPPPXXXRXXPXXXGXIGXPXP 761
           P+ GG   PP    +    PPPP      P   G    P P
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 748


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
 Frame = +3

Query: 639 PLXGGXXXPPPXTXLXXXX--PPPPXXXRXXPXXXGXIGXPXPXXG 770
           P+ GG   PPP   L      PPPP      P   G    P P  G
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +3

Query: 639 PLXGGXXXPPPXTXLXXXXPPPPXXXRXXPXXXGXIGXPXP 761
           P+ GG   PP    +    PPPP      P   G    P P
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 748


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = +3

Query: 639 PLXGGXXXPPPXTXLXXXXPPPPXXXRXXPXXXGXIGXPXP 761
           P  G    PPP        PPPP      P   G  G P P
Sbjct: 289 PTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 329


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
 Frame = +3

Query: 639 PLXGGXXXPPPXTXLXXXX--PPPPXXXRXXPXXXGXIGXPXPXXG 770
           P+ GG   PPP   L      PPPP      P   G    P P  G
Sbjct: 304 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +3

Query: 639 PLXGGXXXPPPXTXLXXXXPPPPXXXRXXPXXXGXIGXPXP 761
           P+ GG   PP    +    PPPP      P   G    P P
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,973,419
Number of Sequences: 27780
Number of extensions: 257750
Number of successful extensions: 894
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)