Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_P07
(900 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.52
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.7
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 27 3.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.3
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc... 26 6.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.3
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 6.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.3
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 26 8.4
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.9 bits (64), Expect = 0.52
Identities = 23/88 (26%), Positives = 40/88 (45%)
Frame = -1
Query: 432 EALEQSRQNIXXTAEELRKAHPDVEKNATALREKLQAPVQNTVQESQKLAKKVSSNVQET 253
EALE+ +Q + +E K ++ +L E+ V+N +E ++ K +
Sbjct: 1362 EALEKEKQELETKLQETAKETDTFKQQVNSLNEE----VENLKKEVEQANTKNTRLAAAW 1417
Query: 252 NEKLAPKIKAAYDDFAKNTQEVIKKIQE 169
NEK K++ FA QE+ K +E
Sbjct: 1418 NEKCENLKKSSLTRFAHLKQELTNKNKE 1445
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +2
Query: 755 PXPXANPPGXXPXPPXPPLTXXVTXXPHPTTXPSXXLRXPPTXNXPP 895
P P PP P PP+ T P PT PT PP
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = -1
Query: 411 QNIXXTAEELRKAHPDVEKNATALREKLQAPVQNTVQESQKLAKKVSSNVQETNEKLAPK 232
+NI E+ R + NA+ + K P + T++ Q+LAK + +++ E+L+
Sbjct: 136 KNILKAIEDSRYPFVANKLNASTIEVK---PQRTTLESRQQLAKVLEGYAKDSREQLSAM 192
Query: 231 IKAAYDDFAKN 199
+ AKN
Sbjct: 193 RTELKKEIAKN 203
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/42 (26%), Positives = 16/42 (38%)
Frame = +2
Query: 755 PXPXANPPGXXPXPPXPPLTXXVTXXPHPTTXPSXXLRXPPT 880
P P PP PP P + P P+ ++ PP+
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPS 186
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +1
Query: 772 PPRXXPXPPXSPPHXXGYXXPPP 840
PP P PP +PP G PP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPP 1732
>SPAC23H4.11c |cnl2||centromere localized protein
Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = -1
Query: 447 TARPKEALEQSRQNIXXTAEELRKAHPD--VEKNATALREKLQAPVQNTVQESQKLAKKV 274
T + ++ L + R NI ++ + K+ D + N L+ A + V+E
Sbjct: 49 TQQRQKRLAKLRANIHLESQVIGKSRIDRMLATNVEKLQTVSHASTLHDVEEFYTSHSAK 108
Query: 273 SSNVQETNEKLAPKIKAAY 217
++ E NE+L+ +++AY
Sbjct: 109 PLDISEINERLSEAVQSAY 127
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 807 GGXGGXGXXPGGLAXGXG 754
GG GG G PGG G G
Sbjct: 235 GGPGGFGGGPGGFGGGLG 252
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 807 GGXGGXGXXPGGLAXGXG 754
GG GG G PGG G G
Sbjct: 221 GGHGGFGGGPGGFEGGPG 238
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/85 (22%), Positives = 44/85 (51%)
Frame = -1
Query: 426 LEQSRQNIXXTAEELRKAHPDVEKNATALREKLQAPVQNTVQESQKLAKKVSSNVQETNE 247
++ Q+I T L K D+E++ +++ + V + Q+ ++++ +Q+T E
Sbjct: 496 MKTQEQSIELT--RLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKE 553
Query: 246 KLAPKIKAAYDDFAKNTQEVIKKIQ 172
L+ K + DD+ +EV+ K++
Sbjct: 554 VLSKSSKES-DDY----EEVVGKLR 573
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Frame = +2
Query: 755 PXPXANPPGXXPXP-PXPPLTXXVTXXPHPTTXPSXXLRXPPTXNXPP 895
P P P P P P PP + P P P PP PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +1
Query: 760 PXCQPPRXXPXPPXSPPHXXGYXXPPP 840
P P P PP PP G PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = -1
Query: 279 KVSSNVQET--NEKLAPKIKAAYD 214
+V N++ET EK A K+KA+YD
Sbjct: 299 EVDLNIEETVLKEKYADKVKASYD 322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,693
Number of Sequences: 5004
Number of extensions: 33153
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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