Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_P06
         (976 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    37   0.005
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    37   0.005
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.3  

>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +3

Query: 168 LXVTGEKISXILKAAAVDVXPYWPGLFXXXLEXINVRDLITN 293
           + +T +K+  + KAA VDV P W  +F   LE  ++++L+ N
Sbjct: 20  IEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLN 61


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +3

Query: 168 LXVTGEKISXILKAAAVDVXPYWPGLFXXXLEXINVRDLITN 293
           + +T +K+  + KAA VDV P W  +F   LE  ++++L+ N
Sbjct: 20  IEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLN 61


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/51 (27%), Positives = 16/51 (31%)
 Frame = +2

Query: 539  PPXXXPXHPPPPXXXAXXXXRXPXPXPXPLXXPXXCXAPGVVPXXPXPRAL 691
            PP   P   PP    +      P P P P        AP   P  P P  +
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI 1091


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/48 (29%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
 Frame = +2

Query: 539 PPXXXPXHPP--PPXXXAXXXXRXPXPXPXPLXXPXXCXAPGVVPXXP 676
           PP   P  PP  PP          P P   P+  P     P   P  P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 21/99 (21%), Positives = 27/99 (27%)
 Frame = +1

Query: 598 PTPXPAXPSXXPALXLXCTRXGPPXAXPXRPCXRXXXXXXXXPXPXXXXXXPLXPXXGPP 777
           P+  P  PS  P           P + P  P           P P      P+      P
Sbjct: 161 PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQA--PVANTSSRP 218

Query: 778 AXCSXPXGRXXSAXXPVPVXPRXXXXXPRDRXXPXPPXS 894
           +  + P G   +     P  P      P     P PP S
Sbjct: 219 SSFAPPAGHAPNVTSESPKFPNRGPSIPSASVPPVPPSS 257


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/44 (31%), Positives = 16/44 (36%)
 Frame = +2

Query: 563 PPPPXXXAXXXXRXPXPXPXPLXXPXXCXAPGVVPXXPXPRALA 694
           PPPP          P P P P+  P      G  P  P P  +A
Sbjct: 732 PPPPPPAVIV----PTPAPAPIPVPPPAPIMGGPPPPPPPPGVA 771


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,128
Number of Sequences: 5004
Number of extensions: 23979
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)