Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_P06
(976 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 55 7e-08
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 52 8e-07
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 33 0.23
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 32 0.54
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 32 0.71
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.8
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 29 3.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.8
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 3.8
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 29 3.8
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 29 3.8
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 6.6
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 6.6
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 6.6
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 29 6.6
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 6.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.6
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 28 8.8
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 28 8.8
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 55.2 bits (127), Expect = 7e-08
Identities = 23/40 (57%), Positives = 32/40 (80%)
Frame = +3
Query: 174 VTGEKISXILKAAAVDVXPYWPGLFXXXLEXINVRDLITN 293
+TGEKI+ +LKAA V+ PYWPGLF LE ++V++LIT+
Sbjct: 23 ITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITS 62
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 51.6 bits (118), Expect = 8e-07
Identities = 22/40 (55%), Positives = 31/40 (77%)
Frame = +3
Query: 174 VTGEKISXILKAAAVDVXPYWPGLFXXXLEXINVRDLITN 293
+TGEKI+ +LKAA V+ P WPGLF LE ++V++LIT+
Sbjct: 23 ITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLITS 62
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 33.5 bits (73), Expect = 0.23
Identities = 21/70 (30%), Positives = 22/70 (31%)
Frame = +2
Query: 455 PXXPXTXYSPPRLXGPXSXXXXXSXLXXPPXXXPXHPPPPXXXAXXXXRXPXPXPXPLXX 634
P P +PP L P PP P PPPP P P P P
Sbjct: 31 PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMC-----PPPPPPMPSYS 85
Query: 635 PXXCXAPGVV 664
P AP V
Sbjct: 86 PCQSYAPAPV 95
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +2
Query: 554 PXHPPPPXXXAXXXXRXPXPXPXPLXXPXXCXAPGVVPXXPXP 682
P PPPP A P P P+ P C P + P P P
Sbjct: 29 PCPPPPPPMCAPPPLPCPPP---PICPPQFCPPPPMCPPPPPP 68
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 32.3 bits (70), Expect = 0.54
Identities = 23/78 (29%), Positives = 24/78 (30%)
Frame = -2
Query: 714 RXXPXXXARARGXGXXGTTPGAXQXXGXXXGXGXGXGXRXXXXAXXXGGGGWXGXXXGGX 535
R P R+ G G G G G G G G R GGG W G GG
Sbjct: 31 RPSPFFGGRSGGWGRPGWGGGGPGWGRGGGGSGWGGG-RGGGWGNNGGGGNWGGNGGGGN 89
Query: 534 XSXLXXXXXEXGPXRRGG 481
G R GG
Sbjct: 90 GGGGRGGGGGGGGGRGGG 107
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 31.9 bits (69), Expect = 0.71
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +2
Query: 554 PXHPPPPXXXAXXXXRXPXPXPXPLXXPXXCXAPGVVPXXPXPR 685
P PPPP R P P P+ P P P P PR
Sbjct: 138 PPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPR 181
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 31.1 bits (67), Expect = 1.2
Identities = 28/121 (23%), Positives = 33/121 (27%), Gaps = 7/121 (5%)
Frame = +1
Query: 598 PTPXPAXPSXXPALXLXCTRX----GPPXAXPXRPCXRXXXXXXXXPXPXXXXXXPLX-- 759
P+P P PS P + + GPP P P P P P
Sbjct: 149 PSPGPVDPSEDPQPSVEPSEDPQPSGPPSPGPVDPSEDPQPSGSSSPGPVDPSDEPSPSG 208
Query: 760 -PXXGPPAXCSXPXGRXXSAXXPVPVXPRXXXXXPRDRXXPXPPXSXRXXRTXXPPXXXP 936
P GP P + PV P P P + R PP P
Sbjct: 209 PPSPGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPPGPPGPPTRRP 268
Query: 937 P 939
P
Sbjct: 269 P 269
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/68 (29%), Positives = 22/68 (32%)
Frame = +2
Query: 482 PPRLXGPXSXXXXXSXLXXPPXXXPXHPPPPXXXAXXXXRXPXPXPXPLXXPXXCXAPGV 661
PP P S + P P PPPP P P P P P PG+
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWP----PPPPPPPGRTPGPPGMPGM 316
Query: 662 VPXXPXPR 685
P P R
Sbjct: 317 PPPPPPSR 324
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/98 (24%), Positives = 32/98 (32%)
Frame = +2
Query: 389 PXXGAPPGLXTTXXAXALXXXXPXXPXTXYSPPRLXGPXSXXXXXSXLXXPPXXXPXHPP 568
P PPG T + P P + + PP + G + P P PP
Sbjct: 298 PPPPPPPG--RTPGPPGMPGMPPPPPPSRFGPPGMGG--MPPPPPPGMRYPGGMPP--PP 351
Query: 569 PPXXXAXXXXRXPXPXPXPLXXPXXCXAPGVVPXXPXP 682
PP + P P P P G++P P P
Sbjct: 352 PPRYPSAGPGMYPPPPPS--RPPAPPSGHGMIPPPPPP 387
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/68 (29%), Positives = 22/68 (32%)
Frame = +2
Query: 482 PPRLXGPXSXXXXXSXLXXPPXXXPXHPPPPXXXAXXXXRXPXPXPXPLXXPXXCXAPGV 661
PP P S + P P PPPP P P P P P PG+
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWP----PPPPPPPGRTPGPPGMPGM 326
Query: 662 VPXXPXPR 685
P P R
Sbjct: 327 PPPPPPSR 334
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/98 (24%), Positives = 32/98 (32%)
Frame = +2
Query: 389 PXXGAPPGLXTTXXAXALXXXXPXXPXTXYSPPRLXGPXSXXXXXSXLXXPPXXXPXHPP 568
P PPG T + P P + + PP + G + P P PP
Sbjct: 308 PPPPPPPG--RTPGPPGMPGMPPPPPPSRFGPPGMGG--MPPPPPPGMRYPGGMPP--PP 361
Query: 569 PPXXXAXXXXRXPXPXPXPLXXPXXCXAPGVVPXXPXP 682
PP + P P P P G++P P P
Sbjct: 362 PPRYPSAGPGMYPPPPPS--RPPAPPSGHGMIPPPPPP 397
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/99 (23%), Positives = 27/99 (27%)
Frame = +2
Query: 389 PXXGAPPGLXTTXXAXALXXXXPXXPXTXYSPPRLXGPXSXXXXXSXLXXPPXXXPXHPP 568
P G PP + P P PP GP PP PP
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP--------PPPGGCPPPP 772
Query: 569 PPXXXAXXXXRXPXPXPXPLXXPXXCXAPGVVPXXPXPR 685
PP P P P + P P +P P+
Sbjct: 773 PPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVPK 811
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/99 (23%), Positives = 27/99 (27%)
Frame = +2
Query: 389 PXXGAPPGLXTTXXAXALXXXXPXXPXTXYSPPRLXGPXSXXXXXSXLXXPPXXXPXHPP 568
P G PP + P P PP GP PP PP
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP--------PPPGGCPPPP 772
Query: 569 PPXXXAXXXXRXPXPXPXPLXXPXXCXAPGVVPXXPXPR 685
PP P P P + P P +P P+
Sbjct: 773 PPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVPK 811
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = +2
Query: 554 PXHPPPPXXXAXXXXRXPXPXPXPLXXPXXCXAPGVVPXXPXPRALAXXXGXXRLS 721
P PPPP P P PL P AP P P P L G L+
Sbjct: 215 PPAPPPPIGGIAPVNAHGAPPPPPLP-PVGAGAPPPPPPPPPPAQLMASSGTPSLA 269
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/99 (23%), Positives = 27/99 (27%)
Frame = +2
Query: 389 PXXGAPPGLXTTXXAXALXXXXPXXPXTXYSPPRLXGPXSXXXXXSXLXXPPXXXPXHPP 568
P G PP + P P PP GP PP PP
Sbjct: 304 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP--------PPPGGCPPPP 355
Query: 569 PPXXXAXXXXRXPXPXPXPLXXPXXCXAPGVVPXXPXPR 685
PP P P P + P P +P P+
Sbjct: 356 PPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVPK 394
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = -2
Query: 681 GXGXXGTTPGAXQXXGXXXGXGXGXGXRXXXXAXXXGGGGWXGXXXGG 538
G G G PG G G G G G GGGG+ G GG
Sbjct: 136 GYGGMGGGPGG-YGMGGYGGGGGGGGDFGGYGGGGMGGGGYGGGGDGG 182
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = +2
Query: 554 PXHPPPPXXXAXXXXRXPXPXPXPLXXPXXCXAPGVVPXXPXPRALAXXXGXXRLS 721
P PPPP P P PL P AP P P P L G L+
Sbjct: 201 PPAPPPPIGGIAPVNAHGAPPPPPLP-PVGAGAPPPPPPPPPPAQLMASSGTPSLA 255
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = +2
Query: 554 PXHPPPPXXXAXXXXRXPXPXPXPLXXPXXCXAPGVVPXXPXPRALAXXXGXXRLS 721
P PPPP P P PL P AP P P P L G L+
Sbjct: 201 PPAPPPPIGGIAPVNAHGAPPPPPLP-PVGAGAPPPPPPPPPPAQLMASSGTPSLA 255
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = +2
Query: 542 PXXXPXHPPPPXXXAXXXXRXPXPXPXPLXXPXXCXAPGVVPXXPXPRALA 694
P P PPPP A P P P PL C VP P + +A
Sbjct: 104 PVPAPCCPPPPAPAAPCCPPPPPPTPSPL----VCCKQAPVPENPCCQIVA 150
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +2
Query: 542 PXXXPXHPPPPXXXAXXXXRXPXPXPXPLXXPXXCXAPGVVPXXPXPR 685
P P PPPP + + P P P P P P +P P PR
Sbjct: 69 PTESPPLPPPPLPLSNPPAK-PTPPPPP---PKPTIRPPPIPASPPPR 112
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +2
Query: 542 PXXXPXHPPPPXXXAXXXXRXPXPXPXPLXXPXXCXAPGVVPXXPXPR 685
P P PPPP + + P P P P P P +P P PR
Sbjct: 291 PTESPPLPPPPLPLSNPPAK-PTPPPPP---PKPTIRPPPIPASPPPR 334
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/49 (30%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Frame = +2
Query: 539 PPXXXPXHPPPPXXXAXXXXRXPXPXPXPLXXPXXCXAPGV-VPXXPXP 682
P P P P P P P P+ P C AP P P P
Sbjct: 103 PEPVAPVPAPAPVYEPYACAAPPCPPPTPVYEPYACAAPPCPAPVAPQP 151
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +2
Query: 542 PXXXPXHPPPPXXXAXXXXRXPXPXPXPLXXPXXCXAPGVVPXXPXP 682
P P PPP A P P P PL P P P P P
Sbjct: 1354 PVPPPPPPPPTMSKAPTGVPLPVPPPPPLFSPSMILPP---PPPPLP 1397
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 6.6
Identities = 27/114 (23%), Positives = 29/114 (25%), Gaps = 2/114 (1%)
Frame = +1
Query: 604 PXPAXPSXXPALXLXCTRXGPPXAXPXRP--CXRXXXXXXXXPXPXXXXXXPLXPXXGPP 777
P P P P L + PP A P P P P P G P
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 297
Query: 778 AXCSXPXGRXXSAXXPVPVXPRXXXXXPRDRXXPXPPXSXRXXRTXXPPXXXPP 939
P G + P P P PP R PP PP
Sbjct: 298 PPPPPPRGSPPTGSLPPP-QAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPP 350
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/69 (26%), Positives = 19/69 (27%)
Frame = +2
Query: 479 SPPRLXGPXSXXXXXSXLXXPPXXXPXHPPPPXXXAXXXXRXPXPXPXPLXXPXXCXAPG 658
SPP P PP PPPP + P P P G
Sbjct: 236 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 295
Query: 659 VVPXXPXPR 685
P P PR
Sbjct: 296 SPPPPPPPR 304
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.6
Identities = 27/114 (23%), Positives = 29/114 (25%), Gaps = 2/114 (1%)
Frame = +1
Query: 604 PXPAXPSXXPALXLXCTRXGPPXAXPXRP--CXRXXXXXXXXPXPXXXXXXPLXPXXGPP 777
P P P P L + PP A P P P P P G P
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 318
Query: 778 AXCSXPXGRXXSAXXPVPVXPRXXXXXPRDRXXPXPPXSXRXXRTXXPPXXXPP 939
P G + P P P PP R PP PP
Sbjct: 319 PPPPPPRGSPPTGSLPPP-QAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPP 371
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/69 (26%), Positives = 19/69 (27%)
Frame = +2
Query: 479 SPPRLXGPXSXXXXXSXLXXPPXXXPXHPPPPXXXAXXXXRXPXPXPXPLXXPXXCXAPG 658
SPP P PP PPPP + P P P G
Sbjct: 257 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 316
Query: 659 VVPXXPXPR 685
P P PR
Sbjct: 317 SPPPPPPPR 325
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 6.6
Identities = 27/114 (23%), Positives = 29/114 (25%), Gaps = 2/114 (1%)
Frame = +1
Query: 604 PXPAXPSXXPALXLXCTRXGPPXAXPXRP--CXRXXXXXXXXPXPXXXXXXPLXPXXGPP 777
P P P P L + PP A P P P P P G P
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 303
Query: 778 AXCSXPXGRXXSAXXPVPVXPRXXXXXPRDRXXPXPPXSXRXXRTXXPPXXXPP 939
P G + P P P PP R PP PP
Sbjct: 304 PPPPPPRGSPPTGSLPPP-QAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPP 356
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/69 (26%), Positives = 19/69 (27%)
Frame = +2
Query: 479 SPPRLXGPXSXXXXXSXLXXPPXXXPXHPPPPXXXAXXXXRXPXPXPXPLXXPXXCXAPG 658
SPP P PP PPPP + P P P G
Sbjct: 242 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 301
Query: 659 VVPXXPXPR 685
P P PR
Sbjct: 302 SPPPPPPPR 310
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/61 (27%), Positives = 19/61 (31%)
Frame = +2
Query: 455 PXXPXTXYSPPRLXGPXSXXXXXSXLXXPPXXXPXHPPPPXXXAXXXXRXPXPXPXPLXX 634
P P T PP P + PP PPPP P P P P+
Sbjct: 175 PPPPTTKAPPP----PTTKAPPPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTA 230
Query: 635 P 637
P
Sbjct: 231 P 231
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = -2
Query: 681 GXGXXGTTPGAXQXXGXXXGXGXGXGXRXXXXAXXXGGGGWXGXXXG 541
G G G PGA G G G G R GGGG+ G G
Sbjct: 526 GGGYGG--PGAYGDFGAYGGGGFRGGMRGSPRGGMGGGGGFRGGPPG 570
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,178,419
Number of Sequences: 27780
Number of extensions: 194102
Number of successful extensions: 622
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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