Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_P05
         (959 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    31   0.18 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.24 
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    30   0.56 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.74 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   0.74 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.2  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    26   6.9  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   9.1  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -2

Query: 643 GGGXXGGXGXXGGXX-FXGXGXXGGAXXRXGGG 548
           GGG  GG G  GG   F G G  GG   R  GG
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGG 478


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 19/52 (36%), Positives = 19/52 (36%)
 Frame = -2

Query: 703 G*XGXGXXQGP*RXXGGXGVGGGXXGGXGXXGGXXFXGXGXXGGAXXRXGGG 548
           G  G G   G     GG G  GG  GG     G    G G  GG     GGG
Sbjct: 206 GFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 21/54 (38%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = -2

Query: 703 G*XGXGXXQGP*RXXGGXGVGG--GXXGGXGXXGGXXFXGXGXXGGAXXRXGGG 548
           G  G G   G     GG G GG  G  GG G   G    G G  GG     GGG
Sbjct: 212 GFGGEGHHHGGHGGFGG-GPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 18/58 (31%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
 Frame = +3

Query: 462 RPXPXXXX*PHWXSXMXPSPSXXVSPTHYPP-----PXLXXAPPSXPXPXXSXPPXXP 620
           RP P      HW     PSP+    P   PP     P L   P   P P  + P   P
Sbjct: 154 RPPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPNLPKLQVHPNRLPHPIHNHPYSSP 211


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 516  SPSXXVSPTHYPPPXLXXAPPSXPXPXXSXPPXXP 620
            +P    +PT  PPP     PPS P P  + PP  P
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAP-PMPAGPPSAP 1731


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -2

Query: 658 GGXGVGGGXXGGXGXXGGXXFXGXGXXGGAXXRXGG 551
           G  G GGG  G  G   G    G G  GGA    GG
Sbjct: 24  GRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +3

Query: 513 PSPSXXVSPTHYPPPXLXXAPPSXPXPXXSXPPXXP 620
           P P+    P   PP     APPS P    + PP  P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 223 SQCQLVRGPVPDPLPLNYYRVYIPNSNLTVEY 318
           S   L  G VP  +P +YY +Y P   +   Y
Sbjct: 488 SMATLPPGAVPTSIPQSYYPIYSPEMAMPQSY 519


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -1

Query: 215 EKYSRMQFKXKFGAGSFDVFLGHRPDPSSLQKQQQKRSNPKLKGT 81
           E  S  +    FG  SFD F+ H  D     +  Q     K+KGT
Sbjct: 288 EPVSTTELTRSFGWNSFDSFMQH--DIQEFNRVLQDNLEKKMKGT 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,388
Number of Sequences: 5004
Number of extensions: 37338
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)