Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_P04
         (964 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0486 - 3455030-3455770                                           26   4.0  
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899...    29   4.2  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   5.5  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.6  

>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 25.8 bits (54), Expect(2) = 4.0
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 619 PGVSPWKLPXCXLLFRPLAAYRIPVPPFXPSGEAWRLSPXLTPXXYPXLP 768
           P  SP + P C   + P      P PP+ PS   + + P + P   P +P
Sbjct: 66  PPPSP-RCPSCHPPYTPPTPRPPPTPPYVPSPPPY-VPPYIPPPTPPYVP 113



 Score = 22.2 bits (45), Expect(2) = 4.0
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 880 PXHXPHFSPXXHPPXFPAXPXXPFPRPT 963
           P + P  +P   PP  P  P    P PT
Sbjct: 113 PPYIPPPTPPYVPPPTPPSPPPYVPPPT 140


>05_05_0155 +
           22787658-22787930,22788029-22788096,22789600-22789915,
           22790207-22790323
          Length = 257

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 880 PXHXPHFSPXXHPPXFPAXPXXPFP 954
           P H PH  P  HPP  P  P  P P
Sbjct: 39  PHHHPH-PPHHHPPHHPHPPHHPHP 62



 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 880 PXHXPHFSPXXHPPXFPAXPXXPFP 954
           P H PH     HPP  P  P  P P
Sbjct: 50  PPHHPHPPHHPHPPHHPHPPHHPHP 74


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 879  PXSXPPLFPPGXPXXVPGXPXPXFPP 956
            P S PP  PP  P   P  P P  PP
Sbjct: 1161 PPSPPPATPPPPPPLSPSLPPPPPPP 1186


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 301 NESAN---ARGEAVCVLGALPLPRSLTRCAR 384
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,455,954
Number of Sequences: 37544
Number of extensions: 440952
Number of successful extensions: 2007
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1952
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)