Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_P03
         (995 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.32 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.51 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.61 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   0.98 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.81
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 515  PPPPPPPXXGG 547
            PPPPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 571  PPPPPPP 591
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect(2) = 0.32
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 571  PPPPPPP 591
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 865  PPPXPPPP 888
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.0 bits (47), Expect = 4.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 572  PPPPPPXGG 598
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 475  PPPPPPXXG 501
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365



 Score = 21.0 bits (42), Expect(2) = 0.32
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 475  PPPPPP 492
            PPPPPP
Sbjct: 1355 PPPPPP 1360



 Score = 21.0 bits (42), Expect(2) = 1.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 623  PPPPPP 640
            PPPPPP
Sbjct: 1355 PPPPPP 1360



 Score = 21.0 bits (42), Expect(2) = 1.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 623  PPPPPP 640
            PPPPPP
Sbjct: 1356 PPPPPP 1361



 Score = 21.0 bits (42), Expect(2) = 1.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 722  PPPPPP 739
            PPPPPP
Sbjct: 1356 PPPPPP 1361



 Score = 21.0 bits (42), Expect(2) = 1.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 722  PPPPPP 739
            PPPPPP
Sbjct: 1357 PPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect(2) = 0.51
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 574  PPPPPPR 594
            PPPPPPR
Sbjct: 1859 PPPPPPR 1865



 Score = 21.0 bits (42), Expect(2) = 0.51
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 490  PXXGXXXXPPPPP 528
            P  G    PPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 21.0 bits (42), Expect(2) = 2.2
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 623  PPPPPP 640
            PPPPPP
Sbjct: 1859 PPPPPP 1864



 Score = 20.6 bits (41), Expect(2) = 2.2
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 515  PPPPPPP 535
            P PPPPP
Sbjct: 1857 PEPPPPP 1863


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.61
 Identities = 12/40 (30%), Positives = 13/40 (32%)
 Frame = +3

Query: 777 PXPPPXXTKXPXXPPPXXPPPXXXXXPXXPXPXPPPXXXP 896
           P P P   + P  P    PP      P    P  PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.8 bits (54), Expect = 0.61
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 685 PPXPXXXPXPPXXPPPPPPXXXP 753
           PP P   P PP  PP  PP   P
Sbjct: 39  PPNPSQGP-PPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 11/28 (39%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
 Frame = +1

Query: 679 PXP-PXPXXXPXPPXXPPPPPPXXXPXP 759
           P P P P   P  P    PP P   P P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 22.2 bits (45), Expect = 7.5
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 684 PPXPPXXPXPXXXPPPPP 737
           PP P   P P   P  PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 9.9
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = +1

Query: 679 PXPPXPXXXPXPPXXPPPPPPXXXP 753
           P  P     P P   PPP  P   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAP 55


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 706 PXPPXXPPPPPPXXXP 753
           P  P  PPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 712 PPXXPPPPPPXXXPXP 759
           PP   PPPPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect(2) = 0.98
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 854 PXXPXPPPPP 883
           P  P PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect(2) = 0.98
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 518 PPPPPPXXGG 547
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 7.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 514 PPPPPPPXXG 543
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352



 Score = 20.6 bits (41), Expect(2) = 0.98
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +2

Query: 863 PXPPPPPXXPXPXXP 907
           P P PPP  P    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 20.6 bits (41), Expect(2) = 0.98
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 515 PPPPPPP 535
           P PPPPP
Sbjct: 341 PAPPPPP 347


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 514 PPPPPPPXXGG 546
           P PPPPP  GG
Sbjct: 374 PLPPPPPIRGG 384



 Score = 23.0 bits (47), Expect = 4.3
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 530 GGGGGGXXXXPXXGGGGGG 474
           G  GG        GGGGGG
Sbjct: 33  GASGGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 302,674
Number of Sequences: 438
Number of extensions: 21979
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33016347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)