Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_P01
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    30   0.50 
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    29   0.88 
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    28   1.5  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    28   2.0  
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    26   6.2  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   8.2  

>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 489 IEDNSVLPAETIVPSFARYSGSPAHLITTLPEAMPDLMTEF 611
           +ED  +LPA   + +    S  P   + T+P  +P ++TEF
Sbjct: 646 MEDTRLLPASLELANTQGASNPPTSALPTVPVPLPSIITEF 686


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +3

Query: 372 DHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYS 548
           + V +G+N  +  A++ + V IG N  I    ++    +I DN+++     + +F  +S
Sbjct: 369 EDVVIGDNCRIGKAILANSVKIGNNCSIEDGAIVAAGVVIGDNTIIEKNKRLTTFESHS 427



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +3

Query: 366 MGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCV-----LKDCCMIEDNSVLPAETIV 527
           +G +  +G N  +++A +   V IG N  IG+  +     + + C IED +++ A  ++
Sbjct: 350 IGRNCTIGSNCSIDSAFLWEDVVIGDNCRIGKAILANSVKIGNNCSIEDGAIVAAGVVI 408



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = +3

Query: 372 DHVFVGENTVVNA-AVVGSYVYIGK-----NVVIGRRCVLKDCCMIEDNSVLPAETIV 527
           + V +  + ++ A  ++G+Y  +G      N +IGR C +   C I D++ L  + ++
Sbjct: 317 EDVVLARSCIIKARTLIGAYTKVGDASVVANTIIGRNCTIGSNCSI-DSAFLWEDVVI 373


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 489 IEDNSVLPAETIVPSFARYSGSPAHLITTLPEAMPDLMTEFT---KSYYQHFLPT 644
           ++D S++   TI+ S+++Y G+   L   L   +P+ M  FT   KS Y    PT
Sbjct: 664 LKDRSIVTKTTIM-SWSKYQGTKESLFQFLSIYIPECMLPFTKLLKSIYSPDCPT 717


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
 Frame = +3

Query: 411 AVVGSYVYIG--KNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLITTLPE 584
           A++G + ++   +N  +G  C+L  C   + N +    T +  + +Y   P HL      
Sbjct: 179 ALLGEFAHVTAFQNNTLGN-CLL--CTPDKVNGI--TATSIREYLKYFYRPEHLTLAYAG 233

Query: 585 AMPDLMTEFTKSYYQHFLPTTA*G*IEHFYXHLMXGLM 698
              ++  E TK  Y H LP+++   +E    H   G M
Sbjct: 234 IPQEIAKEITKELYGH-LPSSSLPPLEAIPSHYTGGFM 270


>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 384 VGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIED 497
           + +N+ +  +++G    IGK VV+    +L D  ++ED
Sbjct: 378 IKDNSNIKKSIIGKNCVIGKGVVVS-NSILMDNIVVED 414


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 559  AGLPEYLAKEGTIVSAGRTELSSIMQQSLSTHLLPI 452
            AG+P  L K+  + + G     +I Q SLS  ++P+
Sbjct: 1041 AGVPTLLIKQENLCNNGSLLFEAIEQNSLSKVMIPL 1076


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,868
Number of Sequences: 5004
Number of extensions: 52097
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)