Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_P01
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1463 - 26722081-26722365,26722831-26722982,26723229-267233... 38 0.014
12_01_0449 + 3548389-3548503,3549282-3549425,3550087-3550212,355... 37 0.025
07_01_0250 - 1864990-1865005,1865429-1865502,1865588-1865659,186... 33 0.40
02_03_0369 - 18239123-18239499,18242046-18242445 33 0.40
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039... 29 3.7
07_01_0954 - 8016804-8016905,8017409-8017469,8017543-8017649,801... 29 4.9
04_03_0361 + 14912420-14912720,14912945-14913117,14913474-149137... 29 6.5
01_02_0006 + 10118766-10118775,10119383-10119526,10120534-101206... 29 6.5
05_07_0248 - 28651807-28651908,28652001-28652061,28652164-286522... 28 8.6
>07_03_1463 -
26722081-26722365,26722831-26722982,26723229-26723354,
26724190-26724333,26724901-26725015
Length = 273
Score = 37.5 bits (83), Expect = 0.014
Identities = 20/89 (22%), Positives = 42/89 (47%)
Frame = +3
Query: 357 PXQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSF 536
P +G+ V +G + V++A +V ++G + V++ M+ S++ T +PS
Sbjct: 119 PTIIGNSVTIGHSAVLHACIVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSG 178
Query: 537 ARYSGSPAHLITTLPEAMPDLMTEFTKSY 623
+ G+PA + L E + + +Y
Sbjct: 179 EVWVGNPAKFLRKLTEEEMAFIAQSATNY 207
>12_01_0449 +
3548389-3548503,3549282-3549425,3550087-3550212,
3550468-3550619,3551118-3551402
Length = 273
Score = 36.7 bits (81), Expect = 0.025
Identities = 19/76 (25%), Positives = 38/76 (50%)
Frame = +3
Query: 357 PXQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSF 536
P +G++V +G + V++A V ++G + V++ M+ S++ T +PS
Sbjct: 119 PTIIGNNVTIGHSAVLHACTVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSG 178
Query: 537 ARYSGSPAHLITTLPE 584
+ G+PA + L E
Sbjct: 179 EVWVGNPAKFLRKLTE 194
>07_01_0250 -
1864990-1865005,1865429-1865502,1865588-1865659,
1865854-1865920,1866365-1866429,1866812-1866843,
1867250-1867326,1867445-1867646,1867733-1867859
Length = 243
Score = 32.7 bits (71), Expect = 0.40
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 363 QMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFAR 542
++G+HV +G NT ++ +G YV +G V I + + NS + + P
Sbjct: 151 KIGNHVEIGANTCIDRGRLGDYVTLGGRVAIRDHVSIASKVRLAANSSVTKDIQKP--GD 208
Query: 543 YSGSPA 560
Y G PA
Sbjct: 209 YGGFPA 214
>02_03_0369 - 18239123-18239499,18242046-18242445
Length = 258
Score = 32.7 bits (71), Expect = 0.40
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Frame = +3
Query: 375 HVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYSGS 554
+V VG ++ + + IG++ ++ +++ ++E SVLP +P+ ++G+
Sbjct: 144 YVTVGAYCLLRSCTIEPECIIGQHSILMEGSLVETNSILEAGSVLPPGRRIPTGELWAGN 203
Query: 555 PAHLITTLPE----AMPDL---MTEFTKSYYQHFLP 641
PA + L +P L + + +S++ FLP
Sbjct: 204 PARFVRKLTNEEIMEIPKLAVAINDLMQSHFSEFLP 239
>02_05_1184 +
34802749-34802892,34802981-34803220,34803636-34803950,
34804030-34804209,34804312-34804504,34805062-34805324,
34805461-34805590,34805719-34805786,34805951-34806199,
34806284-34806357,34808052-34808143,34808603-34808685,
34810337-34810408,34810558-34810683,34810996-34811037
Length = 756
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 366 MGDHVFVGENTVVNAAVVGSYVYIGKNVVI 455
+G+ VGEN V+ +V+G IGKNV+I
Sbjct: 373 VGNGTSVGENCKVSNSVIGQGCNIGKNVLI 402
>07_01_0954 -
8016804-8016905,8017409-8017469,8017543-8017649,
8018278-8018382,8018460-8018546,8018631-8018711,
8018872-8018944,8019288-8019400,8019695-8019788,
8020060-8020115,8020212-8020295,8020384-8020476,
8020592-8020765,8020956-8021099,8021225-8021380
Length = 509
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 378 VFVGENTVVNAAVVGSYVYIGKNVVI 455
V VGENT++ ++ IGKNV+I
Sbjct: 447 VGVGENTIIRNCIIDKNARIGKNVMI 472
>04_03_0361 +
14912420-14912720,14912945-14913117,14913474-14913779,
14913862-14913936,14913976-14914191,14914741-14915527,
14915587-14915681
Length = 650
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 307 DTYYNKSEYVETSRIFSLXKWV 372
D YYN+SEY + S S +WV
Sbjct: 405 DKYYNQSEYRDVSTTMSALEWV 426
>01_02_0006 +
10118766-10118775,10119383-10119526,10120534-10120659,
10120885-10121003,10121355-10121609
Length = 217
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/90 (23%), Positives = 39/90 (43%)
Frame = +3
Query: 354 FPXQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPS 533
FP +GD+V VG + V+ V ++G L D ++E + ++ A +V
Sbjct: 83 FPTIIGDNVTVGHSAVLQGCTVEDEAFVGMG------ATLLDGVVVEKHGMVAAGALV-- 134
Query: 534 FARYSGSPAHLITTLPEAMPDLMTEFTKSY 623
+ G+PA + L + + E +Y
Sbjct: 135 ---WGGNPAKFLRKLTDDEITFIKESASNY 161
>05_07_0248 -
28651807-28651908,28652001-28652061,28652164-28652270,
28652369-28652473,28652556-28652642,28652814-28652894,
28653083-28653155,28653243-28653355,28653439-28653532,
28653633-28653688,28653779-28653865,28653975-28654064,
28654178-28654348,28654752-28654871,28654981-28655193
Length = 519
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 384 VGENTVVNAAVVGSYVYIGKNVVI 455
VGENT +N ++ +G+NVVI
Sbjct: 459 VGENTKINNCIIDMNARVGRNVVI 482
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,223,314
Number of Sequences: 37544
Number of extensions: 390681
Number of successful extensions: 5153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4007
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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