Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_P01
         (881 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2545|AAF53426.1|  189|Drosophila melanogaster CG10846-P...   122   5e-28
AF224265-1|AAF34709.1|  189|Drosophila melanogaster dynactin sub...   122   9e-28
AE014134-2544|AAN10884.1|  205|Drosophila melanogaster CG10846-P...   103   2e-22

>AE014134-2545|AAF53426.1|  189|Drosophila melanogaster CG10846-PA,
           isoform A protein.
          Length = 189

 Score =  122 bits (295), Expect = 5e-28
 Identities = 59/106 (55%), Positives = 74/106 (69%), Gaps = 6/106 (5%)
 Frame = +3

Query: 351 FFPXQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVP 530
           FFP  +G+HVFVGE  VV+AA +GSYVYIGKN +IGRRCVLKDCC+IED +VLP ET V 
Sbjct: 82  FFPMHVGEHVFVGEGAVVSAATIGSYVYIGKNAIIGRRCVLKDCCVIEDGAVLPPETTVS 141

Query: 531 SFARYS------GSPAHLITTLPEAMPDLMTEFTKSYYQHFLPTTA 650
           S+ RY+      G   +    +P AM D M  +TKS+Y+HF+   A
Sbjct: 142 SYMRYTARGTIEGGQGNPY-FVPAAMQDEMINYTKSFYEHFVRAPA 186



 Score = 31.9 bits (69), Expect = 1.2
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +1

Query: 295 MELQDTYYNKSEYVETS 345
           ME+ DTYY+K EYVET+
Sbjct: 1   MEIPDTYYSKDEYVETA 17


>AF224265-1|AAF34709.1|  189|Drosophila melanogaster dynactin
           subunit p25 protein.
          Length = 189

 Score =  122 bits (293), Expect = 9e-28
 Identities = 59/106 (55%), Positives = 73/106 (68%), Gaps = 6/106 (5%)
 Frame = +3

Query: 351 FFPXQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVP 530
           FFP  +G+HVFVGE  VV+AA +GSYVYIGKN +IGRRCVLKDCC IED +VLP ET V 
Sbjct: 82  FFPMHVGEHVFVGEGAVVSAATIGSYVYIGKNAIIGRRCVLKDCCAIEDGAVLPPETTVS 141

Query: 531 SFARYS------GSPAHLITTLPEAMPDLMTEFTKSYYQHFLPTTA 650
           S+ RY+      G   +    +P AM D M  +TKS+Y+HF+   A
Sbjct: 142 SYMRYTARGTIEGGQGNPY-FVPAAMQDEMINYTKSFYEHFVRAPA 186



 Score = 31.9 bits (69), Expect = 1.2
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +1

Query: 295 MELQDTYYNKSEYVETS 345
           ME+ DTYY+K EYVET+
Sbjct: 1   MEIPDTYYSKDEYVETA 17


>AE014134-2544|AAN10884.1|  205|Drosophila melanogaster CG10846-PB,
           isoform B protein.
          Length = 205

 Score =  103 bits (248), Expect = 2e-22
 Identities = 59/125 (47%), Positives = 74/125 (59%), Gaps = 25/125 (20%)
 Frame = +3

Query: 351 FFPXQMGDHVFVGENTVVNAAVVGSYVYIGKNVVI-------------------GRRCVL 473
           FFP  +G+HVFVGE  VV+AA +GSYVYIGKN +I                   GRRCVL
Sbjct: 79  FFPMHVGEHVFVGEGAVVSAATIGSYVYIGKNAIIVSYYLLLYPCNPFTFTIFQGRRCVL 138

Query: 474 KDCCMIEDNSVLPAETIVPSFARYS------GSPAHLITTLPEAMPDLMTEFTKSYYQHF 635
           KDCC+IED +VLP ET V S+ RY+      G   +    +P AM D M  +TKS+Y+HF
Sbjct: 139 KDCCVIEDGAVLPPETTVSSYMRYTARGTIEGGQGNPY-FVPAAMQDEMINYTKSFYEHF 197

Query: 636 LPTTA 650
           +   A
Sbjct: 198 VRAPA 202


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,110,994
Number of Sequences: 53049
Number of extensions: 654484
Number of successful extensions: 5139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3904
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4291240668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)