Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_P01
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    25   1.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   1.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   4.9  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   6.5  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 198 NNF*TTFKISICESSKVPKILKIIET-IILYFEN 296
           N F TT  +S+CE   +   L + ET + ++F+N
Sbjct: 25  NKFKTTRYLSVCERLNLALSLSLTETQVKIWFQN 58


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 236 IIEGS*NIKNN*DHNFIF*KWNSKTLITINRN 331
           I  G  N KNN   +    +WN KT +TI RN
Sbjct: 55  IQSGEYNYKNNVPIDVD--RWNGKTFVTILRN 84


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 293 KWNSKTLITINRN 331
           +W  KT +TI RN
Sbjct: 77  RWRDKTFVTIERN 89


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 479 VFEHTSPTNNNILSNVNV*AYNSCIHNSVLPNKNMITHL 363
           +  + +P +NN   N N   YN   +N +  N N I  +
Sbjct: 81  IISNNNPLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,830
Number of Sequences: 438
Number of extensions: 3918
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)