Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_O22
(924 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S... 157 3e-39
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac... 156 5e-39
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19... 31 0.17
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 30 0.53
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.93
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.5
>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 157 bits (380), Expect = 3e-39
Identities = 78/139 (56%), Positives = 87/139 (62%)
Frame = +2
Query: 107 LXKKXIFRKFTYRGVDLXQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRXAXK 286
L KK FR F YRGV+L QLLD+ EQL++L H GL ++KLR A
Sbjct: 15 LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKS 74
Query: 287 XAPPNXXPXIXXTHLXNMIIXPEMVXSIVXIYNXKTFNXXEIKPXMIXHYLXEFSVTYKP 466
AP N P THL NMII PEMV S+V IYN K FN EI+P MI HYL EFS+TYKP
Sbjct: 75 EAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKP 134
Query: 467 VKHXXPXIXATHSSRFIPL 523
KH P I ATHSSRFIPL
Sbjct: 135 TKHGRPGIGATHSSRFIPL 153
>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 153
Score = 156 bits (378), Expect = 5e-39
Identities = 78/139 (56%), Positives = 87/139 (62%)
Frame = +2
Query: 107 LXKKXIFRKFTYRGVDLXQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRXAXK 286
L KK FR F YRGV+L QLLD+ EQL++L H GL ++KLR A
Sbjct: 14 LRKKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKT 73
Query: 287 XAPPNXXPXIXXTHLXNMIIXPEMVXSIVXIYNXKTFNXXEIKPXMIXHYLXEFSVTYKP 466
AP N P THL NMII PEMV S+V IYN K FN EI+P MI HYL EFS+TYKP
Sbjct: 74 EAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKP 133
Query: 467 VKHXXPXIXATHSSRFIPL 523
KH P I ATHSSRFIPL
Sbjct: 134 TKHGRPGIGATHSSRFIPL 152
>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
S19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 31.5 bits (68), Expect = 0.17
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 323 THLXNMIIXPEMVXSIVXIYNXKTFNXXEIKPXMIXHYLXEFSVTYK 463
T + + I P MV + ++N K++ +I MI H L EF+ T K
Sbjct: 52 TAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 29.9 bits (64), Expect = 0.53
Identities = 24/98 (24%), Positives = 24/98 (24%)
Frame = +2
Query: 623 PXXPPXXXPPXXPXXXXXPXAPXXPXXXXXTPXPXXXXXPXXXXPXXPXXXXPPXXPXXR 802
P P P P P AP P P P P P P P
Sbjct: 515 PQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEA--PSVPQRPAVPVVP--E 570
Query: 803 XXXXPXPXXXPXXXXXPXXPXPPXPXXPXXAPXXXXXP 916
P P P P P PP AP P
Sbjct: 571 ALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPP 608
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.93
Identities = 21/74 (28%), Positives = 21/74 (28%)
Frame = +3
Query: 657 PPXXXXXPXPPXXPXXXXLLPXPXXXXXXXPXXPXPPXXXXXPPXPXXXXXAPXXXXPXP 836
PP PP P P P PP PP P AP P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP----PLP 470
Query: 837 XXXXPXXPPXPPXP 878
P P PP P
Sbjct: 471 ----PAAPAPPPAP 480
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/65 (26%), Positives = 18/65 (27%)
Frame = +3
Query: 621 PXXXPXXXXXXPPPXXXXXPXPPXXPXXXXLLPXPXXXXXXXPXXPXPPXXXXXPPXPXX 800
P P PP P P P + P P P PP PP P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP--PLPPAAPAPPPAPAP 482
Query: 801 XXXAP 815
AP
Sbjct: 483 APAAP 487
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/86 (23%), Positives = 21/86 (24%)
Frame = +3
Query: 621 PXXXPXXXXXXPPPXXXXXPXPPXXPXXXXLLPXPXXXXXXXPXXPXPPXXXXXPPXPXX 800
P P P PP P + P P P P PP P
Sbjct: 970 PPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVP--PVPKLSSKAPPVPLP 1027
Query: 801 XXXAPXXXXPXPXXXXPXXPPXPPXP 878
AP P P PP P
Sbjct: 1028 SADAPPIPVPSTAPPVPIPTSTPPVP 1053
Score = 26.6 bits (56), Expect = 4.9
Identities = 22/103 (21%), Positives = 22/103 (21%), Gaps = 5/103 (4%)
Frame = +2
Query: 605 PXXXXXPXXPPXXXPPXXPXXXXXPXAPXXPXXXXXTPXPXXXXXPXXXXPXXPXXXXP- 781
P P P PP P P P P P P P
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS 1204
Query: 782 ----PXXPXXRXXXXPXPXXXPXXXXXPXXPXPPXPXXPXXAP 898
P P P P P PP P AP
Sbjct: 1205 VGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/87 (22%), Positives = 20/87 (22%), Gaps = 2/87 (2%)
Frame = +2
Query: 632 PPXXXPPXXPXXXXXPXAPXXPXXXXXTPXPXXXXXPXXXXPXXPXXXXPPXXPXXRXXX 811
PP P P P P P P P P PP P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 812 XPXPXXXP--XXXXXPXXPXPPXPXXP 886
P P P P PP P
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/52 (28%), Positives = 15/52 (28%)
Frame = +3
Query: 717 PXPXXXXXXXPXXPXPPXXXXXPPXPXXXXXAPXXXXPXPXXXXPXXPPXPP 872
P P P P P PP P P P P PP PP
Sbjct: 732 PPPPPPAVIVPT-PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/47 (27%), Positives = 13/47 (27%)
Frame = +2
Query: 779 PPXXPXXRXXXXPXPXXXPXXXXXPXXPXPPXPXXPXXAPXXXXXPP 919
PP P P P P P PP P P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/41 (29%), Positives = 12/41 (29%)
Frame = +3
Query: 756 PXPPXXXXXPPXPXXXXXAPXXXXPXPXXXXPXXPPXPPXP 878
P P P P P P P PP PP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/49 (26%), Positives = 13/49 (26%)
Frame = +1
Query: 724 PXXXXPXXXXXXXPXXXXPXXPPPPXXXXXPXXXXXXXXXXXPXXPPPP 870
P P P PPPP P P PPPP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,395
Number of Sequences: 5004
Number of extensions: 25002
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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