Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_O19
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.23 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.93 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   5.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +3

Query: 858 PGNLXPXXXTPX-KPPXXXPPPPPP 929
           PGN  P    P  +PP   PPPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
 Frame = +3

Query: 747 PGXXFPXXRXXVPPPPHPXAPXXXXPPXFXPNXWXXYPGNLXPXXXTPXKP----PXXXP 914
           P    P      PPPP P A          P+ +      + P       P    P   P
Sbjct: 179 PATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAP 238

Query: 915 PPPPP 929
           PPPPP
Sbjct: 239 PPPPP 243


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 20/82 (24%), Positives = 29/82 (35%)
 Frame = +1

Query: 628  PPGNSPPAXXCSQPAXLPXYLVXXXXXXXXXXXXXPLXSTXVPXFPXPAVXSLPLPTPGX 807
            PP + PP+   S+P                     P  S+  P  P P+  + P+P P  
Sbjct: 986  PPKDHPPSAPLSKPVSTSP------AAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPS- 1038

Query: 808  XXXXXPPXSXXTXGPXIPVTXS 873
                 PP    T  P +P + S
Sbjct: 1039 ---TAPPVPIPTSTPPVPKSSS 1057



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/52 (28%), Positives = 17/52 (32%)
 Frame = +1

Query: 733  PLXSTXVPXFPXPAVXSLPLPTPGXXXXXXPPXSXXTXGPXIPVTXSPXXXP 888
            P  S   P  P P+    P+P P       PP S     P   V   P   P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = +1

Query: 751  VPXFPXPAVXSLPLPTPGXXXXXXPPXSXXTXGPXIPVTXSPXXXP 888
            +P  P P+V + P+P P       P  S     P   V   P   P
Sbjct: 1091 IPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
 Frame = +1

Query: 754  PXFPXPAVXSLPLPTPGXXXXXXPPXSXXTXG-PXIPVTXSPXXXPRXNHHXXXPXPPP 927
            P  P P+V + P+P P       PP      G P +P        P+ +     P PPP
Sbjct: 1159 PPVPKPSVAAPPVPAPS---SGIPPVPKPAAGVPPVPPPSEAPPVPKPS-VGVPPVPPP 1213



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/65 (26%), Positives = 22/65 (33%)
 Frame = +1

Query: 733  PLXSTXVPXFPXPAVXSLPLPTPGXXXXXXPPXSXXTXGPXIPVTXSPXXXPRXNHHXXX 912
            P  S   P  P P+V   P+P P       P        P +PV       P+ +     
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPS---GAPPVPKPSVAAPPVPVPSGAPPVPKPS-VAAP 1150

Query: 913  PXPPP 927
            P P P
Sbjct: 1151 PVPAP 1155



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/56 (30%), Positives = 19/56 (33%)
 Frame = +3

Query: 762  PXXRXXVPPPPHPXAPXXXXPPXFXPNXWXXYPGNLXPXXXTPXKPPXXXPPPPPP 929
            P     +PP P P A     PP   P+     P         P  PP   PP P P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPP---PSEAPPVPK--PSVGVPPVPPPSTAPPVPTP 1222


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/49 (30%), Positives = 15/49 (30%)
 Frame = +3

Query: 783 PPPPHPXAPXXXXPPXFXPNXWXXYPGNLXPXXXTPXKPPXXXPPPPPP 929
           PPPP    P     P   P       G   P            PPPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/49 (30%), Positives = 17/49 (34%)
 Frame = +3

Query: 783  PPPPHPXAPXXXXPPXFXPNXWXXYPGNLXPXXXTPXKPPXXXPPPPPP 929
            PPPP P            P+       +       P  PP   PPPPPP
Sbjct: 907  PPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPP--PPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,285
Number of Sequences: 5004
Number of extensions: 42623
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)