Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_O18
         (989 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0630 + 26260159-26260272,26260520-26260894                       34   0.15 
02_05_0686 - 30900748-30902167,30903442-30904742                       32   0.81 
07_03_0560 + 19479597-19480667                                         31   1.9  
11_04_0415 - 17395988-17396161,17397349-17397444,17397489-173980...    30   2.5  
10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,713...    29   7.6  
04_03_0904 + 20717005-20718087                                         29   7.6  
01_01_0162 - 1394980-1395760,1396024-1396037                           29   7.6  
01_01_0159 + 1380421-1381143                                           29   7.6  

>03_05_0630 + 26260159-26260272,26260520-26260894
          Length = 162

 Score = 34.3 bits (75), Expect = 0.15
 Identities = 22/65 (33%), Positives = 23/65 (35%)
 Frame = -2

Query: 793 GGGXGXKGFXAGXRRGXGEXXKGGXRXXXXXXXXXXGXXGVXGGRXRGGXEXGGKXXXXW 614
           GGG G  G   G  RG G    GG            G  G  GGR  GG   GG     +
Sbjct: 93  GGGYGGGGGGYGGGRGGGGYGGGGGGGYGRREGGYGGGGGYGGGRGGGGGGYGGSRGGGY 152

Query: 613 GXXGG 599
           G   G
Sbjct: 153 GGDSG 157


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 31.9 bits (69), Expect = 0.81
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 740 PXPTPXPRXKXFLSXPPTPXXPXAAPP 820
           P P P P  K   + PP P  P AAPP
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPP 337


>07_03_0560 + 19479597-19480667
          Length = 356

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 22/67 (32%), Positives = 25/67 (37%)
 Frame = -2

Query: 793 GGGXGXKGFXAGXRRGXGEXXKGGXRXXXXXXXXXXGXXGVXGGRXRGGXEXGGKXXXXW 614
           GGG G  G   G   G G   +GG            G  G+ GG   GG   GG     +
Sbjct: 168 GGGGGGFGGDGGGGLGGGGGKEGGFGAGGGVGGGAGGGGGMGGG-GGGGFGGGGGKGGGF 226

Query: 613 GXXGGXG 593
           G  GG G
Sbjct: 227 GAGGGMG 233


>11_04_0415 -
           17395988-17396161,17397349-17397444,17397489-17398026,
           17398106-17398422
          Length = 374

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
 Frame = -2

Query: 793 GGGXGXKGFXAGXRRGXGEXXKGGXRXXXXXXXXXXGXXGVXGGR-XRGGXEXG---GKX 626
           GGG G +GF  G  RG G     G            G  G  G +  RG  E G   G  
Sbjct: 11  GGGGGPRGFGGGGPRGFGGGGPRGFGGGGPRGFGGGGPRGFGGSKPRRGNGELGCGRGDD 70

Query: 625 XXXWGXXGGXG 593
              W   GG G
Sbjct: 71  SDLWLGYGGGG 81


>10_03_0021 +
           7129786-7130117,7130227-7130347,7131048-7131136,
           7131375-7131459,7131609-7131771,7132861-7132937,
           7133016-7133160,7133236-7133537,7133615-7133720,
           7134781-7134935,7135556-7135712,7135799-7135891,
           7136232-7136359,7136439-7136696,7136855-7137145,
           7137235-7137318,7138335-7138468,7138557-7138784,
           7139778-7139958,7140021-7140108,7140268-7140434,
           7140750-7141012,7141117-7141120
          Length = 1216

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 192 ALKWPSRTVRIPKSTISLTTWAHATYHSASATGLMSRNT 308
           A   P+  +RIP S I    W+   Y++ S +G M+  T
Sbjct: 498 AFSLPNWILRIPYSFIEAVVWSCVVYYTVSVSGNMTVGT 536


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 740 PXPTPXPRXKXFLSXPPTPXXPXAAPP 820
           P PTP P  K      PTP  P   PP
Sbjct: 150 PKPTPPPTYKPQPKPTPTPYTPTPTPP 176


>01_01_0162 - 1394980-1395760,1396024-1396037
          Length = 264

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
 Frame = +2

Query: 155 RKCPKGEHSVLY-----CPQMAEPDCENPEVHDFVDHVGPCDVPQCFCDRP 292
           R+C   +H +LY     CP  A         HD   H   C    CFC  P
Sbjct: 33  RRCVAVDH-ILYAITVPCPNAAHGCAARTPYHDSHGHAAGCPHAPCFCPEP 82


>01_01_0159 + 1380421-1381143
          Length = 240

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
 Frame = +2

Query: 155 RKCPKGEHSVLY-----CPQMAEPDCENPEVHDFVDHVGPCDVPQCFCDRP 292
           R+C   +H +LY     CP  A         HD   H   C    CFC  P
Sbjct: 9   RRCVAVDH-ILYAITVPCPNAAHGCAARTPYHDSHGHAAGCPHAPCFCPEP 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,587,413
Number of Sequences: 37544
Number of extensions: 257180
Number of successful extensions: 1210
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2893540780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)