Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_O17
(947 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 53 7e-08
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 50 4e-07
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 40 4e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 37 0.004
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 37 0.005
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 0.013
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.078
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.10
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.24
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.72
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.3
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 28 1.7
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 28 2.2
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 3.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 5.1
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 26 6.7
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 26 8.9
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 52.8 bits (121), Expect = 7e-08
Identities = 36/88 (40%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Frame = -1
Query: 947 GGXGGXGGXXXWXXXXXXXXXXGXG--GVGXXXXGLGXGXGGXGG-----GEXXGGXGGK 789
GG GG GG G G G G G GG GG G GG GG
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF 247
Query: 788 GGXEGXGGXGGGXVGXGGXGGGXGGXXW 705
GG G GG GGG G GG GG GG W
Sbjct: 248 GG--GLGGFGGGPGGFGGGPGGHGGPGW 273
Score = 46.0 bits (104), Expect = 8e-06
Identities = 24/46 (52%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 845 GXGXGGXGGGEXXG--GXGGKGGXEGXGGXGGGXVGXGGXGGGXGG 714
G G GG GGG G GG GG G GG G G GG GGG GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG 232
Score = 33.9 bits (74), Expect = 0.034
Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = -1
Query: 875 GGVGXXXXGLGXGXGGXGGGEXXGGXGGKGGXEGXGGXGGGXVGXGGXG---GGXGG 714
GG+ G G GG G GG GG G GG G GG G GG GG
Sbjct: 169 GGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG 225
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 50.4 bits (115), Expect = 4e-07
Identities = 25/55 (45%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 875 GGVGXXXXGLGXGXGGXGGGEXXGGXGGKGGXE-GXGGXGGGXVGXGGXGGGXGG 714
GG G G GG GGG GG+GG G GG GG G GG GG GG
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
Score = 47.2 bits (107), Expect = 3e-06
Identities = 25/55 (45%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 875 GGVGXXXXGLGXGXGGXGGGEXXGGXGGKGGXEGXGGXGGGXVG-XGGXGGGXGG 714
GG G G G GG GG G G +GG G GG GG G GG GG GG
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 37.1 bits (82), Expect = 0.004
Identities = 22/41 (53%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 833 GGXGGGEXXGGXGG-KGGXEGXGGXGGGXVGXGGXGGGXGG 714
GG GG GG GG GG G GG GG G GG GG GG
Sbjct: 9 GGRGGSR--GGRGGFNGGRGGFGGGRGGARG-GGRGGARGG 46
Score = 30.3 bits (65), Expect = 0.41
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = -3
Query: 891 GXXGXGGGWGXXXGVGXRAGGXGXRGVXXGGRG 793
G G GGG G G G R G G RG G RG
Sbjct: 24 GRGGFGGGRGGARG-GGRGGARGGRGGRGGARG 55
Score = 29.1 bits (62), Expect = 0.96
Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = -1
Query: 947 GGXGGX-GGXXXWXXXXXXXXXXGXGGVGXXXXGLGXGXGGXGGGEXXGGXGG-KGG 783
GG GG GG + G GG G G GG GG GG GG KGG
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSS--GGRGGAKGG 70
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 946 GXGGGXGGXXCGGGGGGXGXXG 881
G GGG GG GG GG G G
Sbjct: 27 GFGGGRGGARGGGRGGARGGRG 48
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 40.3 bits (90), Expect = 4e-04
Identities = 23/55 (41%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 875 GGVGXXXXGLGXGXGGXGGGEXXGGXGGKGGXEGXGGXGGGXVG-XGGXGGGXGG 714
GG G G G GG GG G GG G G G GG G GG GG G
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFRG 192
Score = 35.5 bits (78), Expect = 0.011
Identities = 22/44 (50%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 839 GXGGXGG--GEXXGGXGGKGGXEGXGGXGGGXVGXGGXGGGXGG 714
G GG GG G G GG GG GG GGG GG GGG G
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGG-NSRGGFGGG--SRGGFGGGSRG 176
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 37.1 bits (82), Expect = 0.004
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3
Query: 882 PXXPXPPPPPPXXXPPXPPPXP 947
P P PPPPPP PP PP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPP 27
Score = 31.5 bits (68), Expect = 0.18
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 891 PXPPPPPPXXXPPXPPPXP 947
P PPPPP P PPP P
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
Score = 29.5 bits (63), Expect = 0.72
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 797 LPPXXTPLXPXPPARXPTPXXXPQPPP 877
LPP P P PP P P PPP
Sbjct: 4 LPPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 36.7 bits (81), Expect = 0.005
Identities = 20/38 (52%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 833 GGXGGGEXXGGXGGKGGXEGXGGXGGG-XVGXGGXGGG 723
GG GG GG GG+GG G GG GGG G GG G
Sbjct: 447 GGSRGGR--GGFGGRGGFGGRGGFGGGRGRGRGGARSG 482
Score = 33.9 bits (74), Expect = 0.034
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = -1
Query: 803 GXGGKGGXEGXGGXGGGXVGXGGXGGGXG 717
G G +GG G GG GG G GG GGG G
Sbjct: 446 GGGSRGGRGGFGGRGGFG-GRGGFGGGRG 473
Score = 31.9 bits (69), Expect = 0.14
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = -3
Query: 876 GGGWGXXXGVGXRAGGXGXRGVXXGGRGKG 787
GG G G G R GG G RG GGRG+G
Sbjct: 447 GGSRGGRGGFGGR-GGFGGRGGFGGGRGRG 475
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect(3) = 0.013
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3
Query: 891 PXPPPPPPXXXPP 929
P PPPPPP PP
Sbjct: 236 PAPPPPPPPTLPP 248
Score = 23.8 bits (49), Expect(3) = 0.013
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 879 SPXXPXPPPPPP 914
S P PPPPPP
Sbjct: 185 SDYNPPPPPPPP 196
Score = 20.6 bits (41), Expect(3) = 0.013
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +3
Query: 906 PPPXXXPPXPPPXP 947
PPP P PP P
Sbjct: 273 PPPPATPSQPPRPP 286
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.7 bits (71), Expect = 0.078
Identities = 23/78 (29%), Positives = 26/78 (33%)
Frame = +2
Query: 659 TLPPPXXPXLXXXFTPTXXPXSPPLNHLXQXXXXXXXXXXLXXPFPLPPXXTPLXPXPPA 838
T P P P L P+ P +PP + P PLP P PPA
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP-PLPAGMPAAPPLPPA 472
Query: 839 RXPTPXXXPQPPPXPXXP 892
P P P P P P
Sbjct: 473 ---APAPPPAPAPAPAAP 487
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/51 (29%), Positives = 17/51 (33%)
Frame = +3
Query: 795 PXPPXXLPSXXXPXXXXXXXXXXXXXXXSPXXPXPPPPPPXXXPPXPPPXP 947
P PP +P P +P P PP PP P PP P
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTS---TPPVPTPPSLPPSAPPSLPPSAP 436
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +2
Query: 794 PLPPXXTPLXPXPPARXPTPXXXPQPPP 877
PLPP P PP R P QPPP
Sbjct: 352 PLPPQGRSAPPPPPPR-SAPSTGRQPPP 378
Score = 27.1 bits (57), Expect = 3.9
Identities = 18/65 (27%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Frame = +3
Query: 774 PLSPXLSPXPPXXLPSXXXPXXXXXXXXXXXXXXXSPXXPX-------PPPPPPXXXPPX 932
P P L P P LP P +P P PP PP P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Query: 933 PPPXP 947
P P P
Sbjct: 478 PAPAP 482
Score = 24.2 bits (50), Expect(2) = 5.1
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Frame = +3
Query: 897 PPPPPPXXXPP---XPPP 941
PPPPPP P PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378
Score = 20.6 bits (41), Expect(2) = 5.1
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +3
Query: 891 PXPPPPP 911
P PPPPP
Sbjct: 337 PPPPPPP 343
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.10
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Frame = +3
Query: 891 PXPPPPPP---XXXPPXPPPXP 947
P PPPPPP PP PPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782
Score = 31.1 bits (67), Expect = 0.24
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 891 PXPPPPPPXXXPPXPPPXP 947
P PPP P PP PPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768
Score = 29.1 bits (62), Expect = 0.96
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 897 PPPPPPXXXPPXPPPXP 947
PPPPPP P P P P
Sbjct: 732 PPPPPPAVIVPTPAPAP 748
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 788 PFPLPPXXTPLXPXPPARXPTPXXXPQPPPXPXXP 892
P P+PP + PP P PPP P P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Frame = +3
Query: 891 PXPPPPP-PXXXPPXPPPXP 947
P P PPP P P PPP P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPP 767
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.24
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 794 PLPPXXTPLXPXPPARXPTPXXXPQPPPXP 883
P PP P PP+ P P P PP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Frame = +3
Query: 882 PXXPXP-PPPPPXXXPPXP--PPXP 947
P P PPPPP PP P PP P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMP 1724
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 800 PPXXTPLXPXPPARXPTPXXXPQPPPXPXXP 892
P P P PP P P P PP P P
Sbjct: 1700 PQMSAPTPPPPPMSVPPP---PSAPPMPAGP 1727
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Frame = +3
Query: 879 SPXXPXPPP---PPPXXXPPXPPPXP 947
S P PPP PPP PP P P
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/30 (33%), Positives = 12/30 (40%)
Frame = +2
Query: 794 PLPPXXTPLXPXPPARXPTPXXXPQPPPXP 883
P PP P+ PP+ P P P P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.72
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = +3
Query: 774 PLSPXLSPXPPXXLPSXXXPXXXXXXXXXXXXXXXSPXXPXPPPPPPXXXPPXPPP 941
P P S PP PS P P PP PPP PP P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP--KPAAGVPPVPPPSEAPPVPKP 1203
Score = 29.5 bits (63), Expect = 0.72
Identities = 16/59 (27%), Positives = 18/59 (30%)
Frame = +2
Query: 716 PXSPPLNHLXQXXXXXXXXXXLXXPFPLPPXXTPLXPXPPARXPTPXXXPQPPPXPXXP 892
P PP + + P PP TP PP PT P P P P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 882 PXXPXPPPPPPXXXPPXPPP 941
P PP PPP PP P P
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTP 1222
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +2
Query: 788 PFPLPPXXTPLXPXPPARXPTPXXXPQPP 874
P PLP P P P P P PP
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIPTSTPP 1051
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = +3
Query: 774 PLSPXLSPXPPXXLPSXXXPXXXXXXXXXXXXXXXSPXXPXPPPPPPXXXPPXPPP 941
P P S PP PS P P PP P P PP P P
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP---KPSVAVPPVPAPSGAPPVPKP 1126
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = +2
Query: 788 PFPLPPXXTPLXPXPPARXPTPXXXPQPPPXP 883
P P P P P P P P PP P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP 1134
Score = 26.2 bits (55), Expect = 6.7
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = +3
Query: 774 PLSPXLSPXPPXXLPSXXXPXXXXXXXXXXXXXXXSPXXPXPPPPPPXXXPPXPPP 941
P P S PP PS P P PP P P PP P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP---KPSVAAPPVPAPSGAPPVPKP 1164
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = +2
Query: 788 PFPLPPXXTPLXPXPPARXPTPXXXPQPPPXP 883
P P P P P P P P PP P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP 1153
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = +2
Query: 788 PFPLPPXXTPLXPXPPARXPTPXXXPQPPPXP 883
P P P P P P P P PP P
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Score = 25.8 bits (54), Expect = 8.9
Identities = 18/61 (29%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Frame = +3
Query: 774 PLSPXLSPXPPXXLPSXXXPXXXXXXXXXXXXXXXSPXXPXPPP---PPPXXXPPXPPPX 944
P P S PP PS P S P P P PP P PP
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Query: 945 P 947
P
Sbjct: 1143 P 1143
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 891 PXPPPPPPXXXPPXPPPXP 947
P PPPPPP P P P
Sbjct: 3 PAPPPPPPAPAPAAAAPAP 21
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Frame = +3
Query: 879 SPXXPXPPPPPPXXXPPXP---PPXP 947
+P P PPP P PP P PP P
Sbjct: 143 APPRPSIPPPSPASAPPIPSKAPPIP 168
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 800 PPXXTPLXPXPPARXPTPXXXPQPPPXP 883
P + P PP PTP PPP P
Sbjct: 721 PAIKPQVTPAPPTPAPTPAVKHHPPPPP 748
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = -1
Query: 830 GXGGGEXXGGXGGKGGXEGXGGXGGGXVGXGGXGGGXGG 714
G G GG GG+ G G G G V GG G
Sbjct: 120 GRGQNVQRGGRGGRYGSSGGRGAGDTVVSRSSGAGGARG 158
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.4 bits (48), Expect(2) = 3.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 891 PXPPPPPP 914
P PPPPPP
Sbjct: 905 PTPPPPPP 912
Score = 21.8 bits (44), Expect(2) = 3.5
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3
Query: 912 PXXXPPXPPPXP 947
P PP PPP P
Sbjct: 942 PAFPPPPPPPPP 953
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 5.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 897 PPPPPPXXXPPXPPP 941
PPPPPP P PP
Sbjct: 1882 PPPPPPMALPKAGPP 1896
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -1
Query: 833 GGXGGGEXXGGXGGKGGXEGXGGXGGGXVGXGG 735
GG GG GG G +GG GG G G G
Sbjct: 508 GGRGGNYRRGGYG-RGGFRRGGGYGNRNRGFTG 539
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = -2
Query: 940 GGGXGGXXCGG-GGGGXGXXG 881
GGG GG GG GG G G G
Sbjct: 225 GGGLGGAGLGGLGGAGLGGFG 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,450,066
Number of Sequences: 5004
Number of extensions: 17100
Number of successful extensions: 345
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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