Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_O16
         (931 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.076
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.18 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.40 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.7 bits (71), Expect = 0.076
 Identities = 28/116 (24%), Positives = 36/116 (31%), Gaps = 1/116 (0%)
 Frame = +3

Query: 585 NSSTXMTTPPGRNLNPXPILRXXPXLQRPXSTNFDTPXXRSSXXPNVGXXXPXXLLKXXM 764
           N S+  + PP     P P       +  P       P       P+ G   P       +
Sbjct: 329 NGSSNSSLPPPP---PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAV 385

Query: 765 PHPPXSINSPFHIXPXRXTXTLPSXNGXPKXXPPPXPPXP-*PPPXPXXXPPXXXP 929
            +PP    +P    P R    LP      +   PP P  P  PP  P   PP   P
Sbjct: 386 SNPP----APPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 19/56 (33%), Positives = 19/56 (33%)
 Frame = +3

Query: 747 LLKXXMPHPPXSINSPFHIXPXRXTXTLPSXNGXPKXXPPPXPPXP*PPPXPXXXP 914
           LLK   P PP  I       P       P   G P   PPP      PPP P   P
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
 Frame = +3

Query: 792  PFHIXPXRXTXTLPSXNGXPKXXPPPX--PPXP*PPPXPXXXPPXXXP 929
            P    P R     P     P   PPP   PP P  PP P   P    P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +3

Query: 765  PHPPXSINSPFHIXPXRXTXTLPSXNGXPKXXPPPXPPXP*PP-PXPXXXPPXXXP 929
            P P  S+ +P    P      +P+ +G P   P P P    PP P P   PP   P
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAP---PVPKPSVAAPPVPVPSGAPPVPKP 1145


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
 Frame = +3

Query: 849 PKXXPPPXPPXP--*PPPXPXXXPP 917
           P   PPP PP P   PP  P   PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 825 TLPSXNGXPKXXPPPXPPXP*PPPXP 902
           +LP  N  P   PP   P   PPP P
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 864 PPXPPXP*PPPXPXXXPPXXXP 929
           PP  P P PPP P   PP   P
Sbjct: 5   PPGNPPP-PPPPPGFEPPSQPP 25


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/67 (23%), Positives = 21/67 (31%)
 Frame = +3

Query: 693 PXXRSSXXPNVGXXXPXXLLKXXMPHPPXSINSPFHIXPXRXTXTLPSXNGXPKXXPPPX 872
           P   +   P++    P          PP   + P    P     + PS    P   PP  
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198

Query: 873 PPXP*PP 893
           P  P PP
Sbjct: 199 PKVPPPP 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,924
Number of Sequences: 5004
Number of extensions: 29353
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)