Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_O14
         (1292 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    31   0.26 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.60 

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 305

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 23/66 (34%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
 Frame = -3

Query: 1155 GXXGGXGXXXSEXXG-EGGXWGXGGXXXGAKXG--GGEXGGXGXXVXGXXGXXXGXXXXX 985
            G  GG G       G  GG  G GG   GA+ G  GG  GG G    G  G   G     
Sbjct: 6    GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGR-GGARGGRGGSSGGR 64

Query: 984  GSXRRG 967
            G  + G
Sbjct: 65   GGAKGG 70



 Score = 30.3 bits (65), Expect = 0.60
 Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
 Frame = -3

Query: 1158 GGXXGGXGXXXSEXXGEGGXWGXGGXXXGAKXGG--GEXGGXGXXVXGXXGXXXGXXXXX 985
            GG  G  G       G GG  G  G   G   GG  G  GG G    G  G   G     
Sbjct: 9    GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAK 68

Query: 984  GSXR 973
            G  +
Sbjct: 69   GGAK 72


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +3

Query: 1044 PPXPRRXFWPXPXSXPHPTPXPXPXXRXXXXPXPP 1148
            PP P     P P   P P P P P       P PP
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,313,828
Number of Sequences: 5004
Number of extensions: 10150
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 705448190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)