Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_O11
         (961 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.56 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.9  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   6.9  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   9.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = +1

Query: 832 PPXPPPXPQTTXPXPPXXPXPXXXXSSXXASXXPPXXAA 948
           PP PPP P      PP  P P    S+  +    P   A
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQA 799



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 799 PPXXXXXFFSXPPXPPPXPQTTXPXPPXXPXP 894
           PP         PP PPP      P PP  P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +3

Query: 780 PKXXPXPPXXXXXFFFXXPPPPPXPPNNXXXPPXXP 887
           P   P P           PPPPP P      PP  P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 792 PXPPXXXXXFFFXXPPPPPXPP 857
           P PP          PPPPP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = +1

Query: 835 PXPPPXPQTTXPXPPXXPXPXXXXSSXXASXXPPXXAA 948
           P PPP P    P PP  P              PP  +A
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSA 787



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 792 PXPPXXXXXFFFXXPPPPPXPP 857
           P PP          PPPPP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 835  PXPPPXPQTTXPXPPXXPXPXXXXSS 912
            P PPP P +  P P   P P    S+
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSA 1730


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 832 PPXPPPXPQTTXPXPPXXPXP 894
           PP PPP P    P  P  P P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 780 PKXXPXPPXXXXXFFFXXPPPPPXPP 857
           P   P PP     F     PPPP PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +1

Query: 799 PPXXXXXFFSXPPXPPPXPQTTXPXPPXXPXP 894
           PP         PP  P  P    P PP  P P
Sbjct: 173 PPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +1

Query: 826 SXPPXPPPXPQTTXPXPPXXPXPXXXXSSXXASXXPP 936
           S P   PP P    P PP    P    SS  +S  PP
Sbjct: 189 SLPSAVPPMPPKVPP-PPLSQAPVANTSSRPSSFAPP 224


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 834 PPPPPXPPNN 863
           PPPPP PP+N
Sbjct: 307 PPPPPPPPSN 316


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 40  ILSGDSCSRFVKTFSNIQNEQAADYLVGYLPRQC 141
           I++  +C    ++F N+     +D LVG+LPR C
Sbjct: 591 IVNYQACVSNYRSFINVTAR--SDVLVGFLPRSC 622


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,744,640
Number of Sequences: 5004
Number of extensions: 23119
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)