Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_O10
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   211   9e-56
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   211   9e-56
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    28   2.0  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   6.2  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  211 bits (516), Expect = 9e-56
 Identities = 98/155 (63%), Positives = 125/155 (80%)
 Frame = +2

Query: 155 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 334
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 335 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRXXXXXXXXXXXXSLEDVIGIAKIMRNRS 514
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDR            SL+++I +A+ MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 515 MARYLSXSVKEILGTAXSVGCTVEGRPPHDLIDDI 619
           +A+ LS +VKEILGTA SVGCTV+G+ PHD+  +I
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEI 155


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  211 bits (516), Expect = 9e-56
 Identities = 98/155 (63%), Positives = 125/155 (80%)
 Frame = +2

Query: 155 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 334
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 335 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRXXXXXXXXXXXXSLEDVIGIAKIMRNRS 514
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDR            SL+++I +A+ MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 515 MARYLSXSVKEILGTAXSVGCTVEGRPPHDLIDDI 619
           +A+ LS +VKEILGTA SVGCTV+G+ PHD+  +I
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEI 155


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 588 PSTVHPTXCAVPRISFTEXERYRAIDLFLMIFAIPITSSREMLPLCLIFXCF 433
           P+  +P   + PR   T  +R   + + +     P TSSR  LPL +++  F
Sbjct: 213 PTESNPMFLSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMYNHF 264


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 436 LFTITRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 329
           +FT+ R  LK   +   CR N +  GLS   C  +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,323
Number of Sequences: 5004
Number of extensions: 53656
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)