Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_O03
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.17 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.2  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   6.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 684  PPPPPPPXXGG 652
            PPPPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 24.6 bits (51), Expect(2) = 0.17
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 868  PPPPPPXSG 894
            PPPPPP SG
Sbjct: 1357 PPPPPPSSG 1365



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 869  PPPPPPXP 892
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 867  PPPPPPXXRGG 899
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 21.0 bits (42), Expect(2) = 0.17
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 799  PPPPPP 816
            PPPPPP
Sbjct: 1355 PPPPPP 1360


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 856 PXXXPPPPPPXS 891
           P   PPPPPP S
Sbjct: 339 PKPAPPPPPPSS 350



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 681 PPPPPPXXGGXXEKK 637
           PPPPPP   G    K
Sbjct: 343 PPPPPPSSSGPDSAK 357



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 684 PPPPPPPXXGGXXEKKKXFF 625
           PPPPPP   G    K    F
Sbjct: 343 PPPPPPSSSGPDSAKLDKIF 362



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 856 PXXXPPPPPPXSGXG 900
           P    PPPPP S  G
Sbjct: 338 PPKPAPPPPPPSSSG 352


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 684 PPPPPPPXXGG 652
           P PPPPP  GG
Sbjct: 374 PLPPPPPIRGG 384



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 867 PPPPPPXXRGG 899
           P PPPP  RGG
Sbjct: 374 PLPPPPPIRGG 384


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 16  YRPHLIGEIPFKNF 57
           +R HLI +IP K+F
Sbjct: 123 FRDHLINQIPDKSF 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,311
Number of Sequences: 438
Number of extensions: 10859
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)