Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_O01
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   0.84 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   1.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.2 bits (50), Expect(2) = 0.84
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 452 PPSXXPPPPAP 484
           PPS  PPPP P
Sbjct: 20  PPSQPPPPPPP 30



 Score = 23.0 bits (47), Expect(2) = 0.84
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 440 LPPXPPSXXPPPP 478
           LPP  P   PPPP
Sbjct: 4   LPPGNPPPPPPPP 16



 Score = 22.6 bits (46), Expect(2) = 6.4
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 715 PPAGXXXPPPPP 750
           PP     PPPPP
Sbjct: 5   PPGNPPPPPPPP 16



 Score = 21.4 bits (43), Expect(2) = 6.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 736 PPPPPXPXXXXXP 774
           PPPPP P     P
Sbjct: 9   PPPPPPPPGFEPP 21


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 780 GGGXXXXXXXXGWXGGXGXGGGXGGGVG 697
           GGG        G  GG G  GG GGG G
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRG 473


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 443 PPXPPSXXPPPPAP 484
           PP PP+   PPPAP
Sbjct: 467 PPLPPAAPAPPPAP 480


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 442  PPPPXXXXPPPPRA 483
            PPPP    PPPP A
Sbjct: 1707 PPPPPMSVPPPPSA 1720


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,082,982
Number of Sequences: 5004
Number of extensions: 9989
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)