Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_N24
(964 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 38 0.002
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 38 0.003
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.015
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 34 0.026
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.10
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.24
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 1.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 2.3
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.0
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 3.9
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 5.2
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 5.2
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/50 (38%), Positives = 19/50 (38%)
Frame = +1
Query: 388 PXSTPPXXRPSXXPXAXPXPXXLPPPPXXPPXXTXTLPXPPXXPCPPXPP 537
P S PP P P A P P P P P P PP P PP P
Sbjct: 432 PPSAPPSL-PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 36.7 bits (81), Expect = 0.005
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = +1
Query: 388 PXSTPPXXRPSXXPXAXPXPXXLPPPPXXPPXXTXTLPXPPXXPCPPXPP 537
P S PP PS A P P P PP PP P P PP
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Score = 33.1 bits (72), Expect = 0.060
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Frame = +1
Query: 394 STPPXXRPSXXPXAXPXPXXLPPPPXXPPXXTXTLPXPPXXP-CPPXP 534
STPP P P + P PP P P PP P PP P
Sbjct: 413 STPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Score = 33.1 bits (72), Expect = 0.060
Identities = 20/55 (36%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Frame = +1
Query: 388 PXSTPPXXRPSXXPXAXPX-PXXLPPPPXXPPXXTXTLPXPPXXPC----PPXPP 537
P S PP PS P A P P P P PP P P P PP P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Score = 31.1 bits (67), Expect = 0.24
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +1
Query: 403 PXXRPSXXPXAXPXPXXLPPPPXXPPXXTXTLPXPPXXPCPPXPP 537
P PS P P PP PP T+ PP P P P
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAP 277
Score = 30.7 bits (66), Expect = 0.32
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = +1
Query: 394 STPPXXRPSXXPXAXPXPXXLPPPPXXPPXXTXTLPXPPXXPCPP 528
+ PP P P A P P +P P PP P P P P
Sbjct: 445 AAPPL--PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 29.9 bits (64), Expect = 0.56
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Frame = +1
Query: 382 RXPXSTPPXXRPSXXPXAXPXPXX--LPPPPXXP-PXXTXTLPXPPXXPCPPXPP 537
R P PP R P LPPPP P ++P PP P PP
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Frame = +1
Query: 373 PXHRXPXSTPPXXRPSXXPXAXPXPXXLPPPPXXPPXXTXTLPXPPXXPC---PPXPP 537
P R P P P+ P P + PP PP + P PP PP
Sbjct: 237 PSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294
Score = 27.5 bits (58), Expect = 3.0
Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 10/60 (16%)
Frame = +1
Query: 388 PXSTPPXXRPSXXPXAXPXPXXLPP---PPXXPPXXTXTLP--XPPXXP-----CPPXPP 537
P + P P+ P PP PP PP +LP PP P PP PP
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 887 PPPPPXLPPXPXXPXPSXXPPXPPL 961
P PP LPP P P PPL
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPL 449
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 887 PPPPPXLPPXPXXPXPSXXPPXPPL 961
PP PP P P P P+ P PPL
Sbjct: 447 PPLPPSAPIAP--PLPAGMPAAPPL 469
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Frame = +3
Query: 414 PLXXPXGXXXPTXPXPPAXPPPXLXPXPP-XPPXXP 518
PL P P PP+ PP PP PP P
Sbjct: 405 PLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP 440
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 890 PPPPXLPPXPXXPXPSXXPPXPPL 961
P PP LPP P PP P+
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPM 441
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 37.5 bits (83), Expect = 0.003
Identities = 21/55 (38%), Positives = 22/55 (40%)
Frame = +1
Query: 373 PXHRXPXSTPPXXRPSXXPXAXPXPXXLPPPPXXPPXXTXTLPXPPXXPCPPXPP 537
P H P STPP S P P PPP PP + P P P P PP
Sbjct: 1683 PAH--PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP-PMPAGPPSAPPPP 1734
Score = 31.9 bits (69), Expect = 0.14
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +2
Query: 890 PPPPXLPPXPXXPXPSXXPPXPPLS 964
PPPP PP P P PS PP P S
Sbjct: 1715 PPPPSAPPMPAGP-PSAPPPPLPAS 1738
Score = 29.9 bits (64), Expect = 0.56
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 887 PPPPPXLPPXPXXPXPSXXPPXPP 958
PPPP +PP P P PP P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Frame = +1
Query: 373 PXHRXPXSTPPXXRPSXXPXAXPXPXXLP--PPPXXPPXXTXTLPXP 507
P P PP P A P P P PPP P ++P P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.1 bits (77), Expect = 0.015
Identities = 18/55 (32%), Positives = 19/55 (34%)
Frame = +1
Query: 364 LXXPXHRXPXSTPPXXRPSXXPXAXPXPXXLPPPPXXPPXXTXTLPXPPXXPCPP 528
L P P P P+ P P P PPP PP PP P PP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.1 bits (62), Expect = 0.98
Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Frame = +1
Query: 394 STPPXXRPSXXPXAXPXPXXLPPP------PXXPPXXTXTLPXPPXXPCPPXP 534
S PP P P P +PPP P PP P P PP P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.1 bits (62), Expect = 0.98
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 890 PPPPXLPPXPXXPXPSXXPPXPP 958
PPPP PP P PP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 3.0
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Frame = +1
Query: 397 TPPXXRPSXXPXAXPXPXXLPPPPXXPPXXTXTLPXPP-----XXPCPPXPP 537
+PP P+ P P +P PP P P PP P PP PP
Sbjct: 731 SPPPPPPAVIVPT-PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 887 PPPPPXLPPXPXXPXPSXXPPXPPL 961
PPPPP + P P PP P+
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPI 757
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 34.3 bits (75), Expect = 0.026
Identities = 21/49 (42%), Positives = 22/49 (44%)
Frame = +1
Query: 382 RXPXSTPPXXRPSXXPXAXPXPXXLPPPPXXPPXXTXTLPXPPXXPCPP 528
R P S PP RPS P P P PP P P +LP PP P P
Sbjct: 138 RPPTSAPP--RPSIPP---PSPASAPPIPSKAPPIPSSLP-PPAQPAAP 180
Score = 31.5 bits (68), Expect = 0.18
Identities = 23/57 (40%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Frame = +1
Query: 388 PXSTPPXXRPSXXPXAXPXPXXLPPP-----PXXPPXXTXTLP--XPPXXPCPPXPP 537
P S PP PS P P P LPPP P P +LP PP P P PP
Sbjct: 154 PASAPPI--PSKAP---PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 899 PXLPPXPXXPXPSXXPPXPPL 961
P PP P P P+ P PPL
Sbjct: 3 PAPPPPPPAPAPAAAAPAPPL 23
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Frame = +1
Query: 400 PPXXRPSXXPX--AXPXPXXLPP-PPXXPPXXTXTLPXPPXXPCPPXP 534
PP + P A P P PP P PP + P P P P P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = +1
Query: 388 PXSTPPXXRPSXXPXAXPXPXXLPPPPXXPPXXTXTLPXP 507
P +PP PS P P +PPPP T P
Sbjct: 180 PVKSPPSA-PSLPSAVPPMPPKVPPPPLSQAPVANTSSRP 218
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.10
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = +1
Query: 388 PXSTPPXXRPSXXPXAXPXPXXLPPPPXXPPXXTXTLPXPPXXPCPPXP 534
P PP +PS P P PP P P +P P P P P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVP-KPSVAAPPVPAPSGAPPVPKP 1164
Score = 31.1 bits (67), Expect = 0.24
Identities = 16/54 (29%), Positives = 20/54 (37%)
Frame = +1
Query: 373 PXHRXPXSTPPXXRPSXXPXAXPXPXXLPPPPXXPPXXTXTLPXPPXXPCPPXP 534
P + + PP +PS P P PP P P +P P P P P
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP-KPSVAAPPVPVPSGAPPVPKP 1145
Score = 31.1 bits (67), Expect = 0.24
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = +1
Query: 388 PXSTPPXXRPSXXPXAXPXPXXLPPPPXXPPXXTXTLPXPPXXPCPPXP 534
P PP +PS P P PP P +P P P P P
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
Score = 31.1 bits (67), Expect = 0.24
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Frame = +1
Query: 373 PXHRXPXSTPPXXRPSXXPXAXPXPXX----LPPPPXXPPXXTXTLPXPPXXPCPPXPP 537
P + + PP PS P P +PPP PP ++ PP P PP
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Score = 29.5 bits (63), Expect = 0.74
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Frame = +1
Query: 388 PXSTPPXXRPSXXPXAXPXPXXLPPPP----XXPPXXTXTLPXPPXXPCP 525
P PP +PS P P PP P PP T PP P P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP-VPAP 1242
Score = 29.1 bits (62), Expect = 0.98
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Frame = +1
Query: 388 PXSTPPXXRPSXXPXAXPXPXXLPP---PPXXPPXXTXTLPXPP-XXPCPPXPP 537
P + PP PS + P P PP P PP ++ PP P PP
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPP 1113
Score = 28.7 bits (61), Expect = 1.3
Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Frame = +1
Query: 373 PXHRXPXSTPPXXRPSXXPXAXPXPXX----LPPPPXXPPXXTXTLPXPP-XXPCPPXPP 537
P + PP PS P P P +PPP PP T + PP P PP
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPV-PKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = +1
Query: 400 PPXXRPSXXPXAXPXPXXLPPPPXXPPXXTXTLPXPPXXPCPPXP 534
PP +P+ P P PP P P PP PP P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPP---VPKPSVGVPPVPPPSTAPPVP 1220
Score = 27.5 bits (58), Expect = 3.0
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Frame = +1
Query: 388 PXSTPPXXRPSXXPXAXPXP----XXLPPPPXXPPXXTXTLPXPPXXPCPPXPP 537
P PP +PS P P +P P PP ++ PP P P P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP-VPVPSGAP 1140
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/57 (28%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Frame = +1
Query: 373 PXHRXPXSTPPXXRPSXXPXAXPXPXXLPP---PPXXPPXXTXTLPXPPXXPCPPXP 534
P + PP PS P P PP P PP + P P P P
Sbjct: 1013 PVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAP 1069
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Frame = +1
Query: 373 PXHRXPXSTPPXXRPSXXPXAXPXPXXLPP---PPXXPPXXTXTLPXPPXXPCPPXPP 537
P + + PP PS P PP P PP ++ PP P P P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP-VPAPSGAP 1159
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/59 (27%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Frame = +1
Query: 373 PXHRXPXSTPPXXRPSXXPXAXPXPXXLPPPPXX----PPXXTXTLPXPPXXPCPPXPP 537
P + + PP PS P PP P PP PP P PP
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.1 bits (67), Expect = 0.24
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +2
Query: 890 PPPPXLPPXPXXPXPSXXPPXPP 958
PPPP PP P PS PP PP
Sbjct: 9 PPPP--PPPPGFEPPSQPPPPPP 29
Score = 29.5 bits (63), Expect = 0.74
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +1
Query: 445 PXXLPPPPXXPPXXTXTLPXPPXXPCPPXPP 537
P PPPP PP PP P PP PP
Sbjct: 5 PPGNPPPPPPPPGFE-----PPSQPPPPPPP 30
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 887 PPPPPXLPPXPXXPXPSXXPPXPP 958
PPPPP PP P PP PP
Sbjct: 9 PPPPP--PPPGFEPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 444 PTXPXPPAXPPPXLXPXPPXPPXXP 518
P P PP PP P P PP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 887 PPPPPXLPPXPXXPXPSXXPPXPP 958
PP P PP P P PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +3
Query: 444 PTXPXPPAXPPPXLXPXPPXPPXXP 518
P PP PPP P PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 426 PXGXXXPTXPXPPAXPPPXLXPXPPXPP 509
P G P P P PP P PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPS--QPPPPPPP 30
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.7 bits (61), Expect = 1.3
Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = -1
Query: 517 GXXGGXGGXGXRXGGGXAGGXGXV-GXXXPXGXXRGXXWXXWMXXXGGRGXXXG 359
G GG GG G GG GG G G G RG GGRG G
Sbjct: 20 GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG----GSSGGRGGAKG 69
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -2
Query: 960 RGGXGGXXEGXGXXGXGGRXGGGGG 886
RGG GG G G G GGR G GG
Sbjct: 15 RGGRGGFNGGRGGFG-GGRGGARGG 38
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -2
Query: 960 RGGXGGXXEGXGXXGXGGRXGGGGG 886
RGG GG G G GGR G GGG
Sbjct: 8 RGGRGGSRGGRGGFN-GGRGGFGGG 31
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -2
Query: 960 RGGXGGXXEGXGXXGXGGRXGGGGG 886
RGG G G G GGR G GG
Sbjct: 32 RGGARGGGRGGARGGRGGRGGARGG 56
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 957 GGXGGXXEGXGXXGXGGRXGGGGG 886
GG GG G G GGR G GG
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGG 46
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 960 RGGXGGXXEGXGXXGXGGRXGGGGG 886
RGG G G G G GG GG GG
Sbjct: 36 RGGGRGGARG-GRGGRGGARGGRGG 59
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 960 RGGXGGXXEGXGXXGXGGRXGGGGG 886
RGG GG G G GGR G GG
Sbjct: 47 RGGRGGARGGRG-GSSGGRGGAKGG 70
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 463 PPXXPPXXTXTLPXPPXXPCPPXPP 537
PP P LP PP P P PP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPP 248
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 887 PPPPPXLPPXPXXPXPSXXPPXPP 958
P PP P P P+ PP PP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPP 244
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +3
Query: 414 PLXXPXGXXXPTXPXPPAXPPPXLXPXPPXPPXXP 518
P P P+ P PP P P P PP P
Sbjct: 577 PPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAP 611
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 444 PTXPXPPAXPPPXLXPXPPXPPXXP 518
P+ P PPA P P P PP P
Sbjct: 662 PSVPQPPAAPVVPEVPSVPQPPAVP 686
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -2
Query: 960 RGGXGGXXEGXGXXGXGGRXGGGGG 886
RGG GG G G GGR G GGG
Sbjct: 450 RGGRGGFG---GRGGFGGRGGFGGG 471
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 893 PPPXLPPXPXXPXPSXXPPXP 955
PP + P P P PS PP P
Sbjct: 295 PPMGMYPLPFSPLPSAAPPIP 315
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -2
Query: 960 RGGXGGXXEGXGXXGXGGRXGGGGG 886
RGG GG G G GG GG G
Sbjct: 144 RGGRGGSRGGFGGNSRGGFGGGSRG 168
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 960 RGGXGGXXEGXGXXGXGGRXGGGGG 886
RGG GG G G G R G GGG
Sbjct: 151 RGGFGG--NSRGGFGGGSRGGFGGG 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,533
Number of Sequences: 5004
Number of extensions: 24990
Number of successful extensions: 441
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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