Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_N23
         (935 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.8  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    27   5.0  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +3

Query: 222 MFTNVYNTGLLITLTNYIGAGSHSFDRTTSFDSIDLEELSEPTTTLQPAQQSSES 386
           ++ +VY TG  +  T      S S   TTS  S      S  TTT  P+  SS S
Sbjct: 111 LYWSVYLTGNGVLQTT---VSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSS 162


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 411 VLLMTIVINAAWLLVNIACVVGLHRRRXGNIKFYVLFAACRLVLVLCWFSVP 566
           VL +++V   AW      CV  L +   G I F+VL     L+L++     P
Sbjct: 94  VLAVSVVFFTAW-----GCVNPLEKSTFGKIAFFVLIGLTCLILLITMILEP 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,456
Number of Sequences: 5004
Number of extensions: 59820
Number of successful extensions: 161
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)