Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_N21
         (915 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   5.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 468 SHVLSCVIPWILXITVLPPLSELIPLAA 385
           S +LS V+  +L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = +2

Query: 770 PPPPXXPXPPPXXRXRVXPKXPXXPXXP 853
           PPPP     P     +  P+ P  P  P
Sbjct: 765 PPPPSAQNVPQNTNSQAIPRIPILPMIP 792


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 468 SHVLSCVIPWILXITVLPPLSELIPL 391
           S +LS  + ++L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +2

Query: 716 PGKXGPPSPXXPPPLXXXPPPPXXPXP 796
           P +  PP+P   PP    P  P    P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +2

Query: 734 PSPXXPPPLXXXPPPPXXPXPPP 802
           P    PP     PPP   P  PP
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 770 PPPPXXPXPPP 802
           PP P  P PPP
Sbjct: 338 PPKPAPPPPPP 348


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -1

Query: 468 SHVLSCVIPWILXITVLPPLSELIPL 391
           S ++S  + ++L + ++PP S ++PL
Sbjct: 281 SILISLHVFFLLVVEIIPPTSLVVPL 306


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -1

Query: 468 SHVLSCVIPWILXITVLPPLSELIPL 391
           S ++S  + ++L + ++PP S ++PL
Sbjct: 281 SILISLHVFFLLVVEIIPPTSLVVPL 306


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 468 SHVLSCVIPWILXITVLPPLSELIPL 391
           S +LS  + ++L   ++PP S  IPL
Sbjct: 286 SILLSLTVFFLLLAEIIPPTSLAIPL 311


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 468 SHVLSCVIPWILXITVLPPLSELIPL 391
           S +LS  + ++L   ++PP S  +PL
Sbjct: 273 SILLSLTVFFLLLAEIIPPTSLTVPL 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,579
Number of Sequences: 438
Number of extensions: 5450
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)