Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_N19
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    31   0.24 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   0.60 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.1  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 277  GKILXFXXPPPPPPPXKKXXGGK 345
            G +  F  PPPPPPP     GGK
Sbjct: 939  GVMPAFPPPPPPPPPLVSAAGGK 961


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 302 PPPPPPPXKXGXG 340
           PPPPPPP   G G
Sbjct: 762 PPPPPPPGVAGAG 774



 Score = 26.2 bits (55), Expect(2) = 0.60
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 301 PPPPPPPXKKXXGG 342
           PPPPPPP     GG
Sbjct: 776 PPPPPPPPAVSAGG 789



 Score = 21.4 bits (43), Expect(2) = 0.60
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 286 LXFXXPPPPPP 318
           L    PPPPPP
Sbjct: 727 LLLKSPPPPPP 737


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = -2

Query: 745 GGXXXXXXGXGXXXXGXXXXXGGXGXXGGGGGXXGXXXXG 626
           GG      G G    G     GG G  GGG G  G    G
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 301 PPPPPPPXKKXXG 339
           PPPPPPP ++  G
Sbjct: 311 PPPPPPPSRRNRG 323



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +3

Query: 642 PXXPPPPPXXPXPPXXXXXPXXXXPXPXXXXXXPPAGA 755
           P  PP PP  P  P          P P      PPA A
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPA 481


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +3

Query: 627  PXXXXPXXPPPPPXXPXPPXXXXXPXXXXPXP 722
            P    P  PPPP   P PP     P      P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,947
Number of Sequences: 5004
Number of extensions: 20776
Number of successful extensions: 217
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)