Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_N19
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.14 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 287  WXFXXPPPPPPPXKXG 334
            W    PPPPPPP   G
Sbjct: 1350 WRQQQPPPPPPPPSSG 1365


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 55  TYXPINSXISGYPGCLEYF 111
           TY  IN  +    GCL YF
Sbjct: 289 TYDDINQWVYPLTGCLYYF 307


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 305 PPPPPPXKXG 334
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 642 PXXPPPPPXXPXP 680
           P  PPPPP    P
Sbjct: 341 PAPPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 302 PPPPPPPXKXG 334
           P PPPPP + G
Sbjct: 374 PLPPPPPIRGG 384


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 82  SGYPGCLEYFMKNGMXLXWNR 144
           SGY G L     NG  + W +
Sbjct: 235 SGYEGALRCLAHNGGEIAWTK 255


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 82  SGYPGCLEYFMKNGMXLXWNR 144
           SGY G L     NG  + W +
Sbjct: 235 SGYEGALRCLAHNGGEIAWTK 255


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 82  SGYPGCLEYFMKNGMXLXWNR 144
           SGY G L     NG  + W +
Sbjct: 235 SGYEGALRCLAHNGGEIAWTK 255


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 627  PXXXXPXXPPPPP 665
            P    P  PPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,980
Number of Sequences: 438
Number of extensions: 3307
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)