Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_N16
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.72 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 70   PXPPPPPPR 96
            P PPPPPPR
Sbjct: 1857 PEPPPPPPR 1865



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 534  SXXPPPPPPPXXXH 575
            S  P PPPPP   H
Sbjct: 1854 SGSPEPPPPPPRNH 1867



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 69   PXPPPPPP 92
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 69  PXPPPPPPT 95
           P PPPPPP+
Sbjct: 341 PAPPPPPPS 349



 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 546 PPPPPPXXXHP 578
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 69   PXPPPPPPT 95
            P PPPPPP+
Sbjct: 1355 PPPPPPPPS 1363



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 543  PPPPPPP 563
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 543  PPPPPPP 563
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 455  PPPPPXPP 478
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 457  PPPPXPPP 480
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 462 GGGVXXGXSXXGGGGG 415
           GG +  G +  GGGGG
Sbjct: 36  GGSIVVGANNGGGGGG 51


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 507 PXRGGVXXXSXXPPPPPPP 563
           P RG     S  PPP  PP
Sbjct: 34  PQRGSPPNPSQGPPPGGPP 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,402
Number of Sequences: 438
Number of extensions: 9316
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)