Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_N08
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    61   2e-10
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   4.7  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   8.3  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   8.3  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 13/180 (7%)
 Frame = +1

Query: 250 FRGVPYAKQPVGELRFKELQPAEPWTDYL-DATEEGPVCYQT--DVLYGSLMKP-HGMDE 417
           F G+ YAK PVG+LR++     E   DY  D  +   +C Q   +     +  P    DE
Sbjct: 21  FTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVRNPDFKYDE 80

Query: 418 ACIYANIHVPLNALPAAGETPTKPGLPILVFIHXXXXXXXXXXXXLY-GPEYLVT----R 582
            C++ NI VP      AGE P + G P+L FIH                P+ L       
Sbjct: 81  DCLFLNIWVP------AGEKPAE-GWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGSPA 133

Query: 583 NVVVITFNYRLNFFGFFS----LDTPKVPGNNGLRDMVTLLRWVKRNARAFGGNPDNVTL 750
             ++++  +RLN FGF +    L+      N G  D    L W  ++  +FGGN +N+ +
Sbjct: 134 KFILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIAV 193


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
 Frame = -3

Query: 840 SINXALEXKPSVALDKGEKVSSSGPSXXA------RQGHVVRITSKGSGVPLHPTEQSHH 679
           S N  L  KP + L   E +  +G    A       QG+V R T   S  P H    SH+
Sbjct: 191 SENNGLMYKPMIVLHSNEFLLITGSPKDAIGLFVDSQGNVTRSTLTFSFYPKHVFSTSHY 250

Query: 678 VPKTIVSGDFRSIQ*EKSKEIQPVVKSDDNNVSCDKILRSI 556
           V   I S   + I       ++ +   DD + S    L S+
Sbjct: 251 V-FAISSSSLQIIDINTLSLVKSINLKDDESFSFISRLTSV 290


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 565 EYLVTRNVVVITFNYRLNFFGFFSLDTPKVPGNNGLRDMVTLLRWVKRNARAFG 726
           ++L+   V++  F Y  ++  FF   T  V     + ++VTLL  +++N  AFG
Sbjct: 556 DFLLAAEVILRFFAYLPDYRLFFRRYTNLVDIVLAVLNLVTLLPSIRKNPVAFG 609


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 680 MSLRPLFPGTLGVSNEKNPKKFNL 609
           + L+P  PG +G++N KN   FN+
Sbjct: 168 LMLKPYVPGFVGMNNIKNNDYFNV 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,720,682
Number of Sequences: 5004
Number of extensions: 79398
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)