Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_N06
         (951 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...    89   6e-19
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...    89   6e-19
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.18 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.24 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   0.96 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.0  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 89.4 bits (212), Expect = 6e-19
 Identities = 39/54 (72%), Positives = 47/54 (87%)
 Frame = +1

Query: 151 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPQEI 312
           RPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+EKDP+ +
Sbjct: 17  RPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRL 70



 Score = 64.1 bits (149), Expect = 3e-11
 Identities = 29/42 (69%), Positives = 34/42 (80%)
 Frame = +2

Query: 302 PKRLFEGNALLRRLVRIGVLDEKQMKXXYVLGLXIEDLLGSR 427
           PKRLFEGNA++RRLVR+G+LDE +MK  YVL L IED L  R
Sbjct: 67  PKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERR 108


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score = 89.4 bits (212), Expect = 6e-19
 Identities = 39/54 (72%), Positives = 47/54 (87%)
 Frame = +1

Query: 151 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPQEI 312
           RPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+EKDP+ +
Sbjct: 17  RPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRL 70



 Score = 63.7 bits (148), Expect = 4e-11
 Identities = 29/42 (69%), Positives = 34/42 (80%)
 Frame = +2

Query: 302 PKRLFEGNALLRRLVRIGVLDEKQMKXXYVLGLXIEDLLGSR 427
           PKRLFEGNA++RRLVR+G+LDE +MK  YVL L IED L  R
Sbjct: 67  PKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERR 108


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
 Frame = +1

Query: 667 PXPXXXNXPPPRGXXXGPXXPLXXP----AXXPXPPPPP 771
           P P     PPP     GP  P   P    A  P PPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = -2

Query: 824 GGGGX*GGGGGXEXXKXXGGGGGXGXXAGXXXGXXGP 714
           GG G  GGG G       G GGG G   G   G  GP
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271



 Score = 30.7 bits (66), Expect = 0.31
 Identities = 20/53 (37%), Positives = 20/53 (37%)
 Frame = -2

Query: 824 GGGGX*GGGGGXEXXKXXGGGGGXGXXAGXXXGXXGPXXXPLGGGXFXXXGXG 666
           GG G  GGG G       G GGG G   G   G  G      GGG     G G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGG-GPGGFGGGPGGHGGPG 272



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -2

Query: 830 GXGGGGX*GGGGGXEXXKXXGGGGGXGXXAGXXXGXXG 717
           G G GG  GG GG       G GGG G   G   G  G
Sbjct: 227 GGGPGGFEGGPGGF-GGGPGGFGGGLGGFGGGPGGFGG 263



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
 Frame = -2

Query: 830 GXGGGGX*G-GGGGXEXXKXXGGGGGXGXXAGXXXGXXGPXXXPLGGGXF 684
           G  GGG  G GGG        GG GG G   G      G      G G F
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF 233



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/49 (34%), Positives = 17/49 (34%)
 Frame = -2

Query: 830 GXGGGGX*GGGGGXEXXKXXGGGGGXGXXAGXXXGXXGPXXXPLGGGXF 684
           G GG G  GG G         GGG  G   G      GP     G G F
Sbjct: 206 GFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = -2

Query: 830 GXGGGGX*GGGGGXEXXKXXGGGGGXGXXAGXXXGXXG 717
           G G GG  GGG G       G GG  G   G   G  G
Sbjct: 29  GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
 Frame = -2

Query: 830 GXGG-GGX*GGGGGXEXXKXXGGGGGXGXXAGXXXGXXGPXXXPLGG 693
           G GG GG  GG  G       GG GG G   G   G  G      GG
Sbjct: 24  GRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
 Frame = -2

Query: 824 GGGGX*GGG-GGXEXXKXXGGGGGXGXXAGXXXGXXG 717
           GG G  GGG GG       G  GG G   G   G  G
Sbjct: 23  GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 686 TPPPQGXXXWXPXPXSXXPRXXXXPPPPPXP 778
           +PPP         P +  P     PPPPP P
Sbjct: 166 SPPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 694 PPRGXXXGPXXPLXXPAXXPXPPPPP 771
           PP      P  P   P   P PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 691 PPPRGXXXGPXXPLXXPAXXPXPPPPP 771
           PPPR    G   PL        PPPPP
Sbjct: 341 PPPRSNAAGSI-PLPPQGRSAPPPPPP 366



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 691 PPPRGXXXGPXXPLXXPAXXPXPPPPP 771
           P P G    P  P   PA  P P P P
Sbjct: 458 PLPAGMPAAPPLPPAAPAPPPAPAPAP 484


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = +2

Query: 656  PPXXXXPXXXTPPPQGXXXWXPXPXSXXPRXXXXP--PPPPXPS 781
            PP    P   TPPP       P P S  P     P  PPPP P+
Sbjct: 1699 PPQMSAP---TPPPPPMSV--PPPPSAPPMPAGPPSAPPPPLPA 1737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,587
Number of Sequences: 5004
Number of extensions: 34918
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)