Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_N05
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.18 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +1

Query: 775 PXRXXGGPXPPPXXXGXPPPXXPXPXXXGPPPPXXPXXPPP 897
           P     GP P P      P     P     PPP  P   PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 213 ETNNSIGILIYGYIELQFDMHIIKLHRSLLKIKNAIPRY 329
           + + ++GI++  +I       ++ L R  LK  +AIP +
Sbjct: 369 KASTTLGIIMSAFIVCWLPFFVLALVRPFLKNPDAIPAF 407


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 13/39 (33%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
 Frame = +1

Query: 757  PXXTPXPXRXXGGPXPP--PXXXGXPPPXXPXPXXXGPP 867
            P     P    G P  P  P     PPP  P P   G P
Sbjct: 1141 PNGIKMPSFMEGMPHLPFTPFNFWNPPPFMPSPFMAGAP 1179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,769
Number of Sequences: 438
Number of extensions: 9251
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)